Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1018g00016 ATGGCTTCCTCTCATTCGCAACATCACCGTGTCTTCGTCGGTAATATACCGTACGGTGCAACGGAACAACAGCTTGTTGAAATTTTCCAGGAGATCGGTCCTGTAGTTTCTTTCCGATTAGTTGTTGATAGAGAAACTGGGAAACCAAAAGGTTATGGATTTTGTGAATATAGGGATCAAGAAACTGTTTTAAGTGCTCGCCGGAATCTTCATGGATATCAAATTAATGGACGTCAATTACGTGTTGATTTTGCTGAAAATGACAAAGGGACTGATAGAAATAATAATCAGAGTTGTGGAGGATCAGGAATGACGCCAATGGTTGGTCCGTTCGGTATAACTTCTCAGAAACAATTAGGCAACCCAACTGTGCAAGGAGAATCAGCTCAAGGAGCTCAAGATCAACCTATTGGTCTTCATATTGCCATGGAAGCCGCAGCTCTTATGACTGCAGCTCTAAATGGTGCTCAAACTGGCATCCAGTCAAATCAAAACTGTTTGCTGAATCAGTCAGCACTGGCAAATGATCCGTTAACCATGCATCTGGCCAGAATGTCCAGGAGTCAGCTGACTGAGATGATCTCTGAGCTTAAGGGAATGGCTACGCACAACAAGGAATTGTCCCGCCAACTGTTGCTTTCTAGGCCACAATTGTCTAAGGCTCTTTTCCAGGCTCAGATAATGCTAGGAATGGTCACTCCTGAAATGTTACAAATGCCAAATCTTAGACAAGCTTCAGATCAAACCTCAATATCTTTAATGAATGAAGGCCACATTGGTCTGACGCAGCAAACATCGGTTCAAAGCAAGTTGCAGTCTTGCTTTACACCTTACATTCAAGAAGGCCAAGCCAACACTCTACCTCGTAACCCTTTTGCTCCTAATCAATCAATTGCAAATCCAAGGCCTCCAAAGCAGCCTAGAATTTCTCTTCAACATCATCCAAACAATCATTTTGTACAGCTCAGAACAGGGCACAATAATTTAACGCTTCCTTCCGAATGTCCCCCCACATTAGGCAGATTGTCTGCAAATTCAACTTATATGAACCATCAAATGAATGCCTCATTCCTTCAGCATCCAATAGGTTTTGGAAGCTCAACTGTCTCACATAATCTTCAAATGGTTCGTCCAGATGCAAGCTTTCAGATGCCATATTTTCCTCGTGTTATTTTGTCTTCGGATGTTGCTTAG 1194 0.4255 MASSHSQHHRVFVGNIPYGATEQQLVEIFQEIGPVVSFRLVVDRETGKPKGYGFCEYRDQETVLSARRNLHGYQINGRQLRVDFAENDKGTDRNNNQSCGGSGMTPMVGPFGITSQKQLGNPTVQGESAQGAQDQPIGLHIAMEAAALMTAALNGAQTGIQSNQNCLLNQSALANDPLTMHLARMSRSQLTEMISELKGMATHNKELSRQLLLSRPQLSKALFQAQIMLGMVTPEMLQMPNLRQASDQTSISLMNEGHIGLTQQTSVQSKLQSCFTPYIQEGQANTLPRNPFAPNQSIANPRPPKQPRISLQHHPNNHFVQLRTGHNNLTLPSECPPTLGRLSANSTYMNHQMNASFLQHPIGFGSSTVSHNLQMVRPDASFQMPYFPRVILSSDVA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1018g00016 397 Gene3D - 158 240 - -
Vivi1018g00016 397 SMART rrm1_1 10 83 IPR000504 GO:0003723
Vivi1018g00016 397 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 5 360 - -
Vivi1018g00016 397 FunFam Cleavage stimulating factor 64 165 240 - -
Vivi1018g00016 397 MobiDBLite consensus disorder prediction 86 132 - -
Vivi1018g00016 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Vivi1018g00016 397 MobiDBLite consensus disorder prediction 91 132 - -
Vivi1018g00016 397 CDD RRM_CSTF2_RNA15_like 11 85 - -
Vivi1018g00016 397 Gene3D - 1 120 IPR012677 -
Vivi1018g00016 397 MobiDBLite consensus disorder prediction 285 312 - -
Vivi1018g00016 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Vivi1018g00016 397 Pfam Hinge domain of cleavage stimulation factor subunit 2 171 238 IPR025742 -
Vivi1018g00016 397 SUPERFAMILY RNA-binding domain, RBD 6 106 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1018g00016 11 93 Eukaryotic Initiation Factors Gene Family AT2G36660 33.735 7.72e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1018g00016 K14407 - gmx:100794399 473.011