Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1018g00015 ATGGATTCGGCGAGGAGTTGGCTTCAGAAGTTGCAGCCTCGTGATAAAACGAAGGTCAAGAAGAGGGACGGAGATGGAAATGGTGATTTGATTACACCTGTGGATGAAGGAGCTCTTTCTGATGTCACCAAACAGAAGGTTGCAGCGGCAAAGCAATATATTGAAAATCACTACAAGGAGCAAATGAAGAATCTTCACGAGAGGAAGGAGCGTCGGACTGTCTTGGAAAAGAAGTTGGCTGATGCGGATGTGTCTGAAGAGGATCAAAACAACTTGCTTAAATTTCTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGGCCAAGATGGGTGTTGATGATTTTGAGCTATTGACTATGATCGGAAAAGGTGCATTTGGAGAGGTTAGAGTCTGCAGAGAGAAGACTACTGATCATGTATTCGCAATGAAAAAGCTAAAGAAATCGGAGATGCTTCGCAGAGGCCAGGTTGAACATGTCAAAGCAGAAAGAAATGTCCTCGCAGAGGTTGACAGCAATTGCATTGTCAAACTTTATTGTTCTTTCCAGGATGATGAGTATCTTTATCTTATTATGGAGTATTTACCGGGTGGAGATGTGATGACTTTACTTATGAGAAAGGATACATTGACTGAAGACGAAGCCAGATTTTATGTTGGAGAAACTGTTCTGGCTATTGAATCTATACACAAGCACAATTATATACATAGGGATATCAAGCCTGACAACTTATTGCTTGATAGATATGGACACTTGAGACTGTCTGACTTTGGACTTTGTAAACCATTAGATTGTAGTACGCTTGAAGAAAAGGATTTTTCTATGGGTCAGAATGCGAATGGGTCTACACAGAATGAGGAACGCTCTGCTCCAAAACGCACACAACAAGAACAACTTCAAAACTGGCAAAAGAACCGGAGGACACTTGCTTATTCTACTGTTGGTACACCGGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGGTATGCAATGGAATGTGATTGGTGGTCACTTGGCGCTATCATGTATGAAATGTTGGTGGGATATCCTCCTTTTTATTCTGATGATCCAATGACAACATGTAGGAAGATAGTGAACTGGAAAACTCACTTGAAATTTCCTGAGGAAGCTGGGCTATCGCCAGAGGCCAAAGATCTTATTAGTAGACTTTTATGTAATGTCAACAATAGGCTGGGATCAAAAGGTGCACATGAAATAAAGGCTCATCGGTTCTTCAAAGGTGTTGAATGGGATAAACTATATCACATTGAAGCTGCATTTATACCCGAGGTCAATGATGAATTAGATACTCAGAATTTTGAAAAGTTTGATGAGTCTGACAGCCAAGTCCGACCGTCCTCAAAAGCTGGTCCATGGAGGAAGATGCTTTCATCCAAGGACTTAAATTTTGTTGGATACACATATAAGAACTTTGAAATTGTAAACGATTATCAAGTTCCTGGGATGGTTGAACTGAAGAAGAAACCCTCCAAATTAAAGAGACCATCTATTAAGTCGCTTTTTGATTCCGATTCCGATTCAACGTCGACTGAGGTTTCTGATAAGTCTCCAAATGATCGGTCTGTTCAAGGAAGCTTTTTAAACCTCTTGCCACCCAGGTTAGGGGCATCTCATAGTGAGAGGAGTCTTTCTCATAAATCCTAA 1671 0.4069 MDSARSWLQKLQPRDKTKVKKRDGDGNGDLITPVDEGALSDVTKQKVAAAKQYIENHYKEQMKNLHERKERRTVLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRAKMGVDDFELLTMIGKGAFGEVRVCREKTTDHVFAMKKLKKSEMLRRGQVEHVKAERNVLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDVMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEEKDFSMGQNANGSTQNEERSAPKRTQQEQLQNWQKNRRTLAYSTVGTPDYIAPEVLLKKGYAMECDWWSLGAIMYEMLVGYPPFYSDDPMTTCRKIVNWKTHLKFPEEAGLSPEAKDLISRLLCNVNNRLGSKGAHEIKAHRFFKGVEWDKLYHIEAAFIPEVNDELDTQNFEKFDESDSQVRPSSKAGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMVELKKKPSKLKRPSIKSLFDSDSDSTSTEVSDKSPNDRSVQGSFLNLLPPRLGASHSERSLSHKS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1018g00015 556 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Vivi1018g00015 556 FunFam Non-specific serine/threonine protein kinase 87 199 - -
Vivi1018g00015 556 SUPERFAMILY Protein kinase-like (PK-like) 90 465 IPR011009 -
Vivi1018g00015 556 Pfam Protein kinase C terminal domain 433 477 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vivi1018g00015 556 MobiDBLite consensus disorder prediction 510 534 - -
Vivi1018g00015 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Vivi1018g00015 556 CDD STKc_NDR_like 114 478 - -
Vivi1018g00015 556 ProSiteProfiles AGC-kinase C-terminal domain profile. 415 487 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vivi1018g00015 556 MobiDBLite consensus disorder prediction 505 556 - -
Vivi1018g00015 556 ProSiteProfiles Protein kinase domain profile. 116 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1018g00015 556 Pfam Protein kinase domain 117 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1018g00015 556 SMART serkin_6 116 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1018g00015 556 CDD MobB_NDR_LATS-like 50 111 - -
Vivi1018g00015 556 MobiDBLite consensus disorder prediction 275 302 - -
Vivi1018g00015 556 MobiDBLite consensus disorder prediction 1 32 - -
Vivi1018g00015 556 PANTHER SERINE/THREONINE-PROTEIN KINASE 37 472 - -
Vivi1018g00015 556 FunFam Non-specific serine/threonine protein kinase 200 267 - -
Vivi1018g00015 556 MobiDBLite consensus disorder prediction 9 29 - -
Vivi1018g00015 556 FunFam Non-specific serine/threonine protein kinase 313 432 - -
Vivi1018g00015 556 Gene3D Phosphorylase Kinase; domain 1 114 443 - -
Vivi1018g00015 556 Gene3D Transferase(Phosphotransferase) domain 1 200 432 - -
Vivi1018g00015 556 SMART pkinase_C_6 415 479 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1018g00015 1 512 AGC Kinase Gene Family AT2G20470 77.927 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vivi1018g00015 Pkinase 1.1e-62 CL0016