Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1010g00003 ATGGCTGCTTTTCTTCCACCTGGTGTTGTTTTCATTCCTAATGATGAGATTCTTATTGGCTATTACCTTGCCAACAAAAATAATGAAGACCTCCATATTTTCAATGGCGCTCACATGATTAAAGAGATGAACCTATATGAGTCTGATCCCTTCGAATTGTCTCCCGCGTCATCCTATTCAATCTACAATGGTAGGCACTGGCACTGGTATTGTTTTACTGCAAAAATTAACGAGGAAAGAAGATATTGCAAGACCGGATTTTGGAAGAAGAAAGGAAATGTTTGTAATATTACTAATGCAGATAACGTAGTTTTAGGAACTAAAACTCTCTTTGTTTTCTATCTTGGAAAATCCCCGAATGATTCAGAAAAAACTAATTGGACTATGTATGAATATGCTTTGGTAGACAATCCGCAGGATGGTTTTGTTCTTTGTAGAATATTTGATTGCCCAATAGAGATGAACGTGGATAATGAATTTGGGCCTTTATCTGATGTTGATGAAACTGATTGTGATGAAAGTTATAATGAGCTTGAGAAATTCTCCGTATGA 552 0.3605 MAAFLPPGVVFIPNDEILIGYYLANKNNEDLHIFNGAHMIKEMNLYESDPFELSPASSYSIYNGRHWHWYCFTAKINEERRYCKTGFWKKKGNVCNITNADNVVLGTKTLFVFYLGKSPNDSEKTNWTMYEYALVDNPQDGFVLCRIFDCPIEMNVDNEFGPLSDVDETDCDESYNELEKFSV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1010g00003 183 Gene3D NAC domain 14 151 IPR036093 GO:0003677|GO:0006355
Vivi1010g00003 183 SUPERFAMILY NAC domain 3 148 IPR036093 GO:0003677|GO:0006355
Vivi1010g00003 183 Pfam No apical meristem (NAM) protein 6 134 IPR003441 GO:0003677|GO:0006355
Vivi1010g00003 183 ProSiteProfiles NAC domain profile. 5 150 IPR003441 GO:0003677|GO:0006355
Vivi1010g00003 183 PANTHER NAC TRANSCRIPTION FACTOR 56 5 149 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1010g00003 5 147 NAC Transcription Factor Family AT2G27300 34.014 4.37e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1010g00003 NAM 3.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1010g00003 - - vvo:131638861 395.971