Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1010g00001 ATGGGCGCTTTGCTTCTACCTGGTCTTGTATTCATCCCCTCTGATCTGGCTCTTGTTGGCTATTACCTTGCCAACAAAAACAATGAAGAGCTACATGATTTCAATGGCTCATACATCATCAAAGAAATGAACTTGTATGAGTTTGACCCCTTTGAATCACCTCATGCATCATCCTTTCAATTCAACAATCGAAGGCACTGGTACTATTTTATTTCAAAAATTGACGAAGAGAGGAGGCATTGTAAGACTGGTTTCTGGAAGAAGAAGGGAAATGTTTGTGAAATTACTAATGGTGGTAACACACTTTTGGGAATGAAAGCTCTTTTTGTTTTTTATCTCGGAAAATCTCCAAACGATGCTGAAAGAACTAACTGGACTATGTATGAGTATACCTTGGCGGATAAACCTCATGCTCCTTTTGTTGTTTGTCGTATTTTTGAATGCCCTCCAGAGATTGATGTGGATTATGAGTTCGGGCCTATATCTGATGTTGATGAAACTGATATTGATGAGGCTGATATCGATGAAAGTGATGTTTAG 540 0.387 MGALLLPGLVFIPSDLALVGYYLANKNNEELHDFNGSYIIKEMNLYEFDPFESPHASSFQFNNRRHWYYFISKIDEERRHCKTGFWKKKGNVCEITNGGNTLLGMKALFVFYLGKSPNDAERTNWTMYEYTLADKPHAPFVVCRIFECPPEIDVDYEFGPISDVDETDIDEADIDESDV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1010g00001 179 Gene3D NAC domain 14 150 IPR036093 GO:0003677|GO:0006355
Vivi1010g00001 179 SUPERFAMILY NAC domain 4 146 IPR036093 GO:0003677|GO:0006355
Vivi1010g00001 179 ProSiteProfiles NAC domain profile. 5 148 IPR003441 GO:0003677|GO:0006355
Vivi1010g00001 179 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 148 - -
Vivi1010g00001 179 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1010g00001 3 145 NAC Transcription Factor Family AT2G27300 33.557 2.82e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1010g00001 NAM 4.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1010g00001 - - vvo:131641217 322.783