Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1003g00002 ATGGGCGATCTTGAAAGAATGGGCAGAGAACTCAAATGTCCAATCTGTTGGAGTTTACTACACGATGCTGCTTCCCTCACCTGCAATCATCTTTTCTGCAACTCTTGTATTTTTAAGTCCATGAAATCTGCATCCGCTTGTCCTGTATGCAAAATACCTTTCACTCGTCGAGAGGTTCGCCCTGCTCCTCACATCGACAATTTAGTTGCGATCTACAAAAACATGGAAGCTGCATCTGGAACTAATTTATTCCTCACTCAAAATCCATCTGATACCAAATCACCAGAGGAGGAAAAACAAAGGGAAGGTAATGCTGAGTCTGGTGAAAAAGGAACAAGTCGAACTCAAAAAAATCACATTGAGGAGGAAAAGACCCCAGTGAGAAACAAGTCTAGGAAGAAGCTAAAGCCTGGAAAGAAAAGTCCGGCTGCTAGCCGCGCAAAACCTTCTTTTCCTGCTAAGAAAAGAGTTCAAGTGCCACAAGATATTCTCTCAGAAACCCCACTTAGGGATTTAAAGTCAGGAGGCTCTCTTAGTAGAATTAACAAAGAAGGAACACAAAAGGCTTTCACCAAGGGAAATGCAATGGAAATTCGGAGTGAAAAAGGTGATTGTGTGAAAGAACCATTCTTTTGGTTAAGAGAGGTGCAAGAAGGTGAAATATTAAGTGGGCCCACTGATGAGGATCAAATTATTGAGGGTTCAACGCCGGTTCCTCCTTCATTTAGTGATCTTAAAGATGCTGATGATGAAAGCCCTACAAAACAAGCTCCATCAGATGAGGTGCAAAACAAACCATCTGTTAATTTATTTGATAGTGAGATGTTTGAATGGACACAAAAGCCATGCTCCCCTGAATTATTTTCAACTCCGACCAAAATGCAGGTTGAGGATGCTGTTGATATTGATGAAATTGATGAGGAAATAGTGGCAGCAACTCAAGAGCATCAGTCAAGTGCTGATGCTTACAGTACACAATTTGCAAATCCAAATGGTAATCAATTGGCTAATACATTACCACCAGGTTCCTCTCAGATTAAAAGTTCTGATGATCTAAATGGAAAAAAGAAGTCTACAAAGAGAAGCAGGAAGGCTAGAGAAAAATATAGGCAGGACCATATTAGAGAACTAAATTGCCAAAGTGATGTTATGAATATGGATTCAAATATAACATCAAAAGCCATTGAGGAGCAATCATTGGACCATAAAAGCAAAGCTTTGAACCTGAAAAAGTCTAGTGGAAGGGCCAAAAGGGTGTGTTTTGTTACTAGTGCAGACTCAACATCTCAAAATGCTTGCACAGTCTCTAATATATTAGGAGTTCAAAACAATAATGAAAGAAAGATGGCTAAGAATTCATATGCTTCATCATCTAAACAAGATAATGAGATGCTATGTCCTAAGAAGATTGCTGGAAAAAGTCAGGTGAAAAGATCTGGAAAACAAAGGCTAGATGTTGTGTGTGACCCACCTGAAGATTTAACTTCAATGCAAAACCAATGCAAAGAGCTTGCTGGATCTGCTTCATCTAGTTTAAGTCCACAGACGGATAATAATAACACCACCAATACTAGGAAAAGAAAAAACAGTTTGTCCAAAAAGTCTATGCCCTGCAGTACTGAAAGGAAGAGTACTAAAAAGTCAAAGCCTTCCCCTGAACTTATCTCTAGGGCTAAAGATGATAAAGAAATTAAGCCAGATGATAGCATTAAGGAAGTTACTGATGTCAGCGTACTGAAGGATTCTTTGAAAGAGAAACAATGTCATTCGACAGATCAACCAGTTTTAAGAAAATGTGTCAGCCATGCCAAAGGGTATCAGTGTGCTTTCTGTCTCTCGTCAGAAGAATCAGAGGCTTCTGGTGCAATTGTGCACTATTTTGATGGCAAGCCCGTCACTGCTGATTATGAAGGAGGATCTAAAGTCATACATTGTCACAGGAATTGCACAGAATGGGCCCCAAATGTATATTTTGAAGGTGATAATGCAATAAATCTCGAAGCTGAAGTAAGTAGAAGTCGGCGAATCAAATGCAGTTTTTGTGGACTTAAAGGAGCTGCACTCGGTTGCTATGAGAAAAGTTGTCGCAGGAGCTTTCATGTCACTTGTGCCAAGTGGACTCCTGAATGTCGATGGGATATGGAAAATTTTGTCATGTTATGCCCTCTACATGCTCCCTCCAAGTTACCATATGAAAGTTCAGGATCGCATCACAGGAGCAAAACACTTGCAGCTACCAAAGCTAAAAGCTGTAGCCTCAAACATGACACTACAACCCAGAGTCGGATTTCTCTTGGATCTCACAAGAAAATTGTGCTGTGTTGTTCAGCTCTATCTTTACAGGAGAGGGATGTTGTTTCCGAATTTGAAAAAGTGTCCAAGTTCACTGTTTCTAAAACTTGGGATTCAAGTGTTACCCATGTAATAGCATCAACAGATGAAAATGGCGCATGCAGAAGGACTCTCAAAGTATTGATGGGTATTCTAGAGGGAAAATGGATTCTCAGCATTGAGTGGATCAAAGCTTGCATAAGAGAAGCTGGACCTGTTGATGAGGACCTTTATGAAGTTAATGTCGACATCCATGGAATTAAGGATGGTCCCCATCTTGGCCGACTAAGAGTATTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTTGTTGGAGATTTCATCCCATCATACAAAGGCTATCTGCAAGACCTTGTGATTGCTGCTGGAGGGATAATTCTTCATAGAAAACCTGTATCAGATGACCAAAATCCAGTGTCACATATCCGTCCACAGCAAGCCCTCATAATCTACAATCTTGAGGTTTCTGCTAATTGTAATCCGTTGGAAAAGGATGCAATTTTCAGCCAAAGGCGACATGATGCAGAGGTTTTGGCAAGATCTACTGGTTCAGTGGTTGCAAGTAATACATGGATTCTGAACTCCATTGCTGGCTGCAAGCTGCAAAGCCTTGCTTAA 2979 0.4048 MGDLERMGRELKCPICWSLLHDAASLTCNHLFCNSCIFKSMKSASACPVCKIPFTRREVRPAPHIDNLVAIYKNMEAASGTNLFLTQNPSDTKSPEEEKQREGNAESGEKGTSRTQKNHIEEEKTPVRNKSRKKLKPGKKSPAASRAKPSFPAKKRVQVPQDILSETPLRDLKSGGSLSRINKEGTQKAFTKGNAMEIRSEKGDCVKEPFFWLREVQEGEILSGPTDEDQIIEGSTPVPPSFSDLKDADDESPTKQAPSDEVQNKPSVNLFDSEMFEWTQKPCSPELFSTPTKMQVEDAVDIDEIDEEIVAATQEHQSSADAYSTQFANPNGNQLANTLPPGSSQIKSSDDLNGKKKSTKRSRKAREKYRQDHIRELNCQSDVMNMDSNITSKAIEEQSLDHKSKALNLKKSSGRAKRVCFVTSADSTSQNACTVSNILGVQNNNERKMAKNSYASSSKQDNEMLCPKKIAGKSQVKRSGKQRLDVVCDPPEDLTSMQNQCKELAGSASSSLSPQTDNNNTTNTRKRKNSLSKKSMPCSTERKSTKKSKPSPELISRAKDDKEIKPDDSIKEVTDVSVLKDSLKEKQCHSTDQPVLRKCVSHAKGYQCAFCLSSEESEASGAIVHYFDGKPVTADYEGGSKVIHCHRNCTEWAPNVYFEGDNAINLEAEVSRSRRIKCSFCGLKGAALGCYEKSCRRSFHVTCAKWTPECRWDMENFVMLCPLHAPSKLPYESSGSHHRSKTLAATKAKSCSLKHDTTTQSRISLGSHKKIVLCCSALSLQERDVVSEFEKVSKFTVSKTWDSSVTHVIASTDENGACRRTLKVLMGILEGKWILSIEWIKACIREAGPVDEDLYEVNVDIHGIKDGPHLGRLRVLNKQPKLFDGYKFYFVGDFIPSYKGYLQDLVIAAGGIILHRKPVSDDQNPVSHIRPQQALIIYNLEVSANCNPLEKDAIFSQRRHDAEVLARSTGSVVASNTWILNSIAGCKLQSLA 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1003g00002 992 Gene3D BRCT domain 767 873 IPR036420 -
Vivi1003g00002 992 Gene3D BRCT domain 879 985 IPR036420 -
Vivi1003g00002 992 MobiDBLite consensus disorder prediction 314 349 - -
Vivi1003g00002 992 MobiDBLite consensus disorder prediction 92 129 - -
Vivi1003g00002 992 MobiDBLite consensus disorder prediction 84 195 - -
Vivi1003g00002 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 726 IPR013083 -
Vivi1003g00002 992 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Vivi1003g00002 992 MobiDBLite consensus disorder prediction 222 266 - -
Vivi1003g00002 992 ProSiteProfiles BRCT domain profile. 796 857 IPR001357 -
Vivi1003g00002 992 FunFam Breast cancer associated RING 1 1 83 - -
Vivi1003g00002 992 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 990 IPR031099 GO:0006281|GO:0006974
Vivi1003g00002 992 MobiDBLite consensus disorder prediction 539 568 - -
Vivi1003g00002 992 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Vivi1003g00002 992 MobiDBLite consensus disorder prediction 314 370 - -
Vivi1003g00002 992 Pfam PHD-like zinc-binding domain 646 724 - -
Vivi1003g00002 992 FunFam Breast cancer associated RING 1 602 727 - -
Vivi1003g00002 992 SMART BRCT_7 880 986 IPR001357 -
Vivi1003g00002 992 SMART BRCT_7 764 847 IPR001357 -
Vivi1003g00002 992 SMART PHD_3 677 725 IPR001965 -
Vivi1003g00002 992 MobiDBLite consensus disorder prediction 471 568 - -
Vivi1003g00002 992 CDD BRCT_Bard1_rpt1 771 844 - -
Vivi1003g00002 992 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Vivi1003g00002 992 ProSiteProfiles BRCT domain profile. 878 992 IPR001357 -
Vivi1003g00002 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Vivi1003g00002 992 MobiDBLite consensus disorder prediction 493 526 - -
Vivi1003g00002 992 FunFam Breast cancer type 1 susceptibility protein homolog 768 874 - -
Vivi1003g00002 992 SUPERFAMILY BRCT domain 882 990 IPR036420 -
Vivi1003g00002 992 SUPERFAMILY BRCT domain 771 870 IPR036420 -
Vivi1003g00002 992 ProSiteProfiles Extended PHD (ePHD) domain profile. 605 725 IPR034732 -
Vivi1003g00002 992 Pfam BRCA1 C Terminus (BRCT) domain 789 844 IPR001357 -
Vivi1003g00002 992 SMART ring_2 678 724 IPR001841 -
Vivi1003g00002 992 SMART ring_2 13 50 IPR001841 -
Vivi1003g00002 992 SUPERFAMILY RING/U-box 4 73 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1003g00002 6 63 RAD5 or RAD16-like Gene Family AT5G22750 35.000 7.00e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1003g00002 K10683 - gmx:100804958 1226.85