LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1001g00002	ATGTTTCCAACTAACAACCTTTCCACTTCACAACCCACTTCCTCAAACTCTTCCACTTCCTCCAACACATCATTGCAAAATATAGAAGTCTTTCATGGGATGTCAGGTTTCCAAGAGGAGATGCGGTTAGCTGCTACTACTCCGAAGAAGCGTGCAGGAAGGAAGATATTCAAGGAGACTCGCCATCCGGTGTATAGGGGTGTAAGGAAGAGGAATTTAGATAAGTGGGTTTGTGAAATGAGGGAGCCTAACAAGAAGACTAAAATTTGGCTAGGGACTTTTCCAACGGCCGAGATGGCAGCCCGAGCCCACGACGTCGCTGCAATAGCATTGAGGGGCCGCTATGCCTGTCTCAATTTTGCAGACTCGGTGTGGAGACTACCTATTCCTGCAACATCTAATACTAAAGATATACAAAAAGCGGCTGCAGAAGCTGCTGAGGCTTTTAGACCAGACAAGAGTTTAAAGACTAATGAGATTGAAACAGTTGTAGCTATTGTTACCGGCGAGAAGTTGATTGATATGTTTTGTGTGGAAAAGGATGAGGATGAAGTGCTGAGTATGCCAGAAGAGTTGATTAATATGTTTTGTGTTGAACAGGATGAGGATGAAGTGTTATGGAGGAATATGGTGATGATGTCCCCTACACATAGCTTGGGAAATTATGAGTATGAACATTTTGACCTAGACTTTCAAGATGATGAAATATCACTGTGGAACTTTGAAATTTGA	732	0.429	MFPTNNLSTSQPTSSNSSTSSNTSLQNIEVFHGMSGFQEEMRLAATTPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAIALRGRYACLNFADSVWRLPIPATSNTKDIQKAAAEAAEAFRPDKSLKTNEIETVVAIVTGEKLIDMFCVEKDEDEVLSMPEELINMFCVEQDEDEVLWRNMVMMSPTHSLGNYEYEHFDLDFQDDEISLWNFEI	243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1001g00002	243	SUPERFAMILY	DNA-binding domain	64	123	IPR016177	GO:0003677
	Vivi1001g00002	243	Pfam	AP2 domain	63	113	IPR001471	GO:0003700\|GO:0006355
	Vivi1001g00002	243	SMART	rav1_2	64	127	IPR001471	GO:0003700\|GO:0006355
	Vivi1001g00002	243	Gene3D	AP2/ERF domain	64	122	IPR036955	GO:0003700\|GO:0006355
	Vivi1001g00002	243	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	10	240	IPR045277	GO:0003700
	Vivi1001g00002	243	ProSiteProfiles	AP2/ERF domain profile.	64	121	IPR001471	GO:0003700\|GO:0006355
	Vivi1001g00002	243	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vivi1001g00002	243	PRINTS	Ethylene responsive element binding protein signature	87	103	IPR001471	GO:0003700\|GO:0006355
	Vivi1001g00002	243	PRINTS	Ethylene responsive element binding protein signature	65	76	IPR001471	GO:0003700\|GO:0006355
	Vivi1001g00002	243	FunFam	Ethylene-responsive transcription factor 2	63	122	-	-
	Vivi1001g00002	243	CDD	AP2	65	123	IPR001471	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1001g00002	35	241	AP2-EREBP Transcription Factor Family	AT4G25470	53.271	1.44e-63	196

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi1001g00002		AP2	3.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1001g00002	-		-	psat:127130221	298.516