Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1001g00001 ATGTTTTATACTAGTGACCCCATTTTATCATCAACTTCATCTTCCTACAACACATCATCGCCAGAATGGGAGATGCAGTTAGCAGCGAGTTGCCCGAAGAAGCGAGCAGGAAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGGGGCGTGAGGAAGAGGAACTTAGATAAATGGGTGTGCGAAATGAGAGAGCCCAACAAGAAGACTAGAATTTGGCTAGGAACTTTTCCAACGGCCGAGATGGCAGCCCGAGCCCACGATGTTGCCGCGATGGCATTGAGAGGCCGCTACGCCTGTCTCAATTTTGCAGACTCGGTGTGGCGACTCCCTATTCCTGAAACCTCTGATACAAAAGATATACAAAAAGCGGCAACTGAAGCTGCCGAGGCTTTCAGACCAGACAAAACTTTAGTGACTAAGAACTTTGACATCGTTGTACCGGTCATCATTGTACCAGACTTTGACATCGTTGTACCGGACTTTGACATCGTTGTACCGGTTATCATTGTACCGGTCATCGCGACAGAGAAGTTGAATATGTTTTGTATAGAAGAGGAAGAAGAAGAAGGAGTGGTGAACATGCCAGATATGTGGAGGAATATGGCTCTAATGTCCCCTACACATAGTTTTGGGGATCATGAGTATGAACATATTGATGAACAAGATTTTCAAGATGATGATGAGGATTTTAAAAAACCTGTTACAGTGATTTGGGCTGTGACTGCAATTGGAGTTCTTTGGTCAAATTTTGCAGTAATATCAAGGATCATGATCGTTACCATGACTGCAAACACGCCGATGTTTGTTTTCATTTTGGTAACTTTAAGGTGCCCGCATTTCTTTACGAGTGTTATAGTGTGTGATACACATAAAAGTTCATCAATACTAAAAGTGGTAGTGGTAATGGTTTTATCTATCAAATTGTATTGCATTTTTTCTTTATCTTCTTTGGCTATAAATTTCTAG 972 0.4218 MFYTSDPILSSTSSSYNTSSPEWEMQLAASCPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPETSDTKDIQKAATEAAEAFRPDKTLVTKNFDIVVPVIIVPDFDIVVPDFDIVVPVIIVPVIATEKLNMFCIEEEEEEGVVNMPDMWRNMALMSPTHSFGDHEYEHIDEQDFQDDDEDFKKPVTVIWAVTAIGVLWSNFAVISRIMIVTMTANTPMFVFILVTLRCPHFFTSVIVCDTHKSSSILKVVVVMVLSIKLYCIFSLSSLAINF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1001g00001 323 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Vivi1001g00001 323 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Vivi1001g00001 323 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Vivi1001g00001 323 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Vivi1001g00001 323 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Vivi1001g00001 323 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Vivi1001g00001 323 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Vivi1001g00001 323 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Vivi1001g00001 323 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Vivi1001g00001 323 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 229 IPR045277 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1001g00001 2 138 AP2-EREBP Transcription Factor Family AT5G51990 69.286 1.26e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi1001g00001 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1001g00001 - K09286 vvo:131653181 525.783