Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1000g00015 ATGGGGAGGAACTCTTCATTGCAACTCATTATCTGCTTCAATATTGTTTTGTACTTGTTGGCATGGTCAAGAGTGCAAACAAGCCACTCCTTAGTGCTACAAAGAACTACTATTATGAGCATAGGTGCTGTGCTTGATTTGACTTCGTTAATGGGGAAGCAACAGAAGATAGCAATGGATATTGCAGTGGAAGAATTCAACATTGACCAATTCAGCTCTTTCAATATAGATTTGCAGATAAAAGACTCGCATAGAAATTCTGCTCAAGTGATTGCAAGTGTTATGGAACTCTCACAGAGCAACCAAGTGCAAGCGATCATAGGAACTATTACGCACAACGAAGCAACACTTGCAAGTGAATTCAGTGGCACCATAAACACCATTCCTATCATGTCTCTAACTTCATTTTCAGCCAGACCAGAATTACTATCTCCTAGATTGCCACATTTCATCCAAGTAGGGGATGATATTAACCTTCATATGCAATGCATATCAGCAATTGTAGGAGAATTCGGATGGAAAAAGGTGACAGTAATTTATGAACTTAATAACGACTTTTCATCTGATCCAGGGATACTACTTAGCCTCTCTTATTCTCTTAAACTTGTTGGTTCCGAAATTGATAACCATTTAGCTTTCCCGTCTTTATCCACTCTTTCAGACCCGAAAACTACAATTGAAAATGAGCTTCATAAGCTGAAAAAGAAGAGTAATAGGGTCTTCTTGATTGTTCATTCTTCTTTAGAGTTGGCTAACATGCTTTGTGAGAAAGCAAAGCAAATAGGTTTGATGGAAAAAGGTTCTGTATGGATTATCCCAAACGAAGTTGCTGGTCTTCTTGATTCGGTTAACTCTTCTGTTATCTTCAACATGCAAGGCGTTGTTGGATTTAAAACACACTTCATTGAAAAGAGTGAGGCTTTTAGAGAGTTTAAGTTCAAATTCCAGAGAAAATTTTCTCTAGAATACCCTGAAGAAGATAACATAAATCCAAGTATCTTTGCACTTCAAGCGTATGATGCAACTAAGGCTATTGCTAAGGCTGCAAATAAATCATCACAGGGAAAATTCAGCCTCACAGAATTCTCAAAAATGACTTTTTTGTCCAATAAATTTGAAAGACTAAGTGGAAAGACATTCTCGAAGAAGAACGGACAATTGTTGCAATCACCAACTTTCAACATAATTAATGTGATTGGGAAAAGTTATAGAGAAATGGCATCTTGGTCTCCAGCGCTTGGTTTTTCCAAACATATTGTTAACCATAATAAGGTAATGGAGATAAGGGCAAACAATGATGATTCTGATGGAGTTTTCAAAACAGTTTATTGGCCGGGAGAATTGCAATCAGTTCCTAAGGGTCATAATAATGAACAAAGGTCATTGAAAATAGCAATACCTTCAAATGGTGCTTTTACTCAGTTTGTGAATGTGGAATATGATCAGGGAAACAATGAACCTAAAGTCACTGGTTTCTCCGTCAGTGTCTTTAAAGCAGCTGTCAAACGTTTACCTTATGTTTTAAATTACAAGTTTTTTCCCTTCAATGGATCATATGATGAAATGGTTGATCATGTCTACAATAAGACATTGGATGCTGCAGTTGGCGATACGTCAATAGTGGCATATAGATATCATTTAGTGGAATTCTCACAGCCTTATATTGAATCTGGCCTACACATGGTGGTTACTGAACAACCAGCAAAATCAAAAGAAACATGGATGTTTTTGGCTGCCTTTACAAAAGAGATGTGGTTGATGATGACAGCTATGCATGTTTTTGTGGGATTTGTTATTTGGTTGATAGAAAGGGAAGTAAATGAAGATCTAAGGGGATTTGGGTCCATGCTATGGTTTTTAGTCACTGTACTATTTTATGCACACAGAGAACCAATAAGAAGGCCCTTAGCTCAAGTTGTACTGACACCATGGTTATTCGCTATTTTCATTGTGACAAATAGTTTCACAGCAAGTTTGACGTCTATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATACAGACCCTTAAAGAAAGAAATTCTCCAATTGGTTGTGACGGAAATTCCTTTATTATCAAGTATTTGACCGAAGTACTAAATTTCAAGCCTGGGAATATAAGAAAAATAAATTCCATGAGTGACTACCCTGCTGCCTTTGATAACAAGGAAATAGAAGCCGCCTTCTTCGTCGCACCTCATGCTAAAGTCTTTCTAGCAAAGTACTCGTGTAAGGGATTTATCAAAGCAGGGAATACTTACAGGCTTGGTGGCTTTGGTTTTGTGGGTTTCTCTCCTCTCATTGTCACTGAATTTTTGACATGTTTGGTAGAAGTGAAATTGGGGTGTTTCCAAAAGGCTCAAGTCTAG 2370 0.3743 MGRNSSLQLIICFNIVLYLLAWSRVQTSHSLVLQRTTIMSIGAVLDLTSLMGKQQKIAMDIAVEEFNIDQFSSFNIDLQIKDSHRNSAQVIASVMELSQSNQVQAIIGTITHNEATLASEFSGTINTIPIMSLTSFSARPELLSPRLPHFIQVGDDINLHMQCISAIVGEFGWKKVTVIYELNNDFSSDPGILLSLSYSLKLVGSEIDNHLAFPSLSTLSDPKTTIENELHKLKKKSNRVFLIVHSSLELANMLCEKAKQIGLMEKGSVWIIPNEVAGLLDSVNSSVIFNMQGVVGFKTHFIEKSEAFREFKFKFQRKFSLEYPEEDNINPSIFALQAYDATKAIAKAANKSSQGKFSLTEFSKMTFLSNKFERLSGKTFSKKNGQLLQSPTFNIINVIGKSYREMASWSPALGFSKHIVNHNKVMEIRANNDDSDGVFKTVYWPGELQSVPKGHNNEQRSLKIAIPSNGAFTQFVNVEYDQGNNEPKVTGFSVSVFKAAVKRLPYVLNYKFFPFNGSYDEMVDHVYNKTLDAAVGDTSIVAYRYHLVEFSQPYIESGLHMVVTEQPAKSKETWMFLAAFTKEMWLMMTAMHVFVGFVIWLIEREVNEDLRGFGSMLWFLVTVLFYAHREPIRRPLAQVVLTPWLFAIFIVTNSFTASLTSITISQVKPSVLDIQTLKERNSPIGCDGNSFIIKYLTEVLNFKPGNIRKINSMSDYPAAFDNKEIEAAFFVAPHAKVFLAKYSCKGFIKAGNTYRLGGFGFVGFSPLIVTEFLTCLVEVKLGCFQKAQV 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1000g00015 789 Gene3D - 158 331 - -
Vivi1000g00015 789 FunFam Glutamate receptor 573 705 - -
Vivi1000g00015 789 FunFam Glutamate receptor 160 329 - -
Vivi1000g00015 789 Pfam Ligand-gated ion channel 582 681 IPR001320 GO:0015276|GO:0016020
Vivi1000g00015 789 CDD GluR_Plant 462 767 - -
Vivi1000g00015 789 Pfam Bacterial extracellular solute-binding proteins, family 3 485 749 IPR001638 -
Vivi1000g00015 789 Gene3D - 33 157 - -
Vivi1000g00015 789 Pfam Receptor family ligand binding region 56 398 IPR001828 -
Vivi1000g00015 789 SUPERFAMILY Periplasmic binding protein-like I 39 454 IPR028082 -
Vivi1000g00015 789 FunFam Glutamate receptor 457 572 - -
Vivi1000g00015 789 SUPERFAMILY Periplasmic binding protein-like II 458 762 - -
Vivi1000g00015 789 CDD PBP1_GABAb_receptor_plant 40 419 IPR044440 -
Vivi1000g00015 789 Gene3D - 456 573 - -
Vivi1000g00015 789 Gene3D - 574 700 - -
Vivi1000g00015 789 SMART GluR_14 461 783 IPR001320 GO:0015276|GO:0016020
Vivi1000g00015 789 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 767 IPR015683 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1000g00015 35 762 Ion Channels AT2G29120 31.593 1.45e-103 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1000g00015 - - vvo:131638799 1544.25