Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1000g00014 ATGGGGAGGAACTCTTCATTGCAACTCATTATCTGCTTCAATATTGTTTTGTACTTGTTGGCATGGTCAAGAGTGCAAACAAGCCACTCCTTAGTGCTACAAAGAACTACTATTATGAGCATAGGTGCTGTGCTTGATTTGACTTCGTTAATGGGGAAGCAACAGAAGATAGCAATGGATATTGCAGTGGAAGAATTCAACATTGACCAATTCAGCTCTTTCAATATAGATTTGCAGATAAAAGACTCGCATAGAAATTCTGCTCAAGTGATTGCAAGTGTTATGGAACTCTCACAGAGCAACCAAGTGCAAGCGATCATAGGAACTATTACGCACAACGAAGCAACACTTGCAAGTGAATTCAGTGGCACCATAAACACCATTCCTATCATGTCTCTAACTTCATTTTCAGCCAGACCAGAATTACTATCTCCTAGATTGCCACATTTCATCCAAGTAGGGGATGATATTAACCTTCATATGCAATGCATATCAGCAATTGTAGGAGAATTCGGATGGAAAAAGGTGACAGTAATTTATGAACTTAATAACGACTTTTCATCTGATCCAGGGATACTACTTAGCCTCTCTTATTCTCTTAAACTTGTTGGTTCCGAAATTGATAACCATTTAGCTTTCCCGTCTTTATCCACTCTTTCAGACCCGAAAACTACAATTGAAAATGAGCTTCATAAGCTGAAAAAGAAGAGTAATAGGGTCTTCTTGATTGTTCATTCTTCTTTAGAGTTGGCTAACATGCTTTGTGAGAAAGCAAAGCAAATAGGTTTGATGGAAAAAGGTTCTGTATGGATTATCCCAAACGAAGTTGCTGGTCTTCTTGATTCGGTTAACTCTTCTGTTATCTTCAACATGCAAGGCGTTGTTGGATTTAAAACACACTTCATTGAAAAGAGTGAGGCTTTTAGAGAGTTTAAGTTCAAATTCCAGAGAAAATTTTCTCTAGAATACCCTGAAGAAGATAACATAAATCCAAGTATCTTTGCACTTCAAGCGTATGATGCAACTAAGGCTATTGCTAAGGCTGCAAATAAATCATCACAGGGAAAATTCAGCCTCACAGAATTCTCAAAAATGACTTTTTTGTCCAATAAATTTGAAAGACTAAGTGGAAAGACATTCTCGAAGAAGAACGGACAATTGTTGCAATCACCAACTTTCAACATAATTAATGTGATTGGGAAAAGTTATAGAGAAATGGCATCTTGGTCTCCAGCGCTTGGTTTTTCCAAACATATTGTTAACCATAATAAGGTAATGGAGATAAGGGCAAACAATGATGATTCTGATGGAGTTTTCAAAACAGTTTATTGGCCGGGAGAATTGCAATCAGTTCCTAAGGGTCATAATAATGAACAAAGGTCATTGAAAATAGCAATACCTTCAAATGGTGCTTTTACTCAGTTTGTGAATGTGGAATATGATCAGGGAAACAATGAACCTAAAGTCACTGGTTTCTCCGTCAGTGTCTTTAAAGCAGCTGTCAAACGTTTACCTTATGTTTTAAATTACAAGTTTTTTCCCTTCAATGGATCATATGATGAAATGGTTGATCATGTCTACAATAAGACATTGGATGCTGCAGTTGGCGATACGTCAATAGTGGCATATAGATATCATTTAGTGGAATTCTCACAGCCTTATATTGAATCTGGCCTACACATGGTGGTTACTGAACAACCAGCAAAATCAAAAGAAACATGGATGTTTTTGGCTGCCTTTACAAAAGAGATGTGGTTGATGATGACAGCTATGCATGTTTTTGTGGGATTTGTTATTTGGTTGATAGAAAGGGAAGTAAATGAAGATCTAAGGGGATTTGGGTCCATGCTATGGTTTTTAGTCACTGTACTATTTTATGCACACAGAGAACCAATAAGAAGGCCCTTAGCTCAAGTTGTACTGACACCATGGTTATTCGCTATTTTCATTGTGACAAATAGTTTCACAGCAAGTTTGACGTCTATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATACAGACCCTTAAAGAAAGAAATTCTCCAATTGGTTGTGACGGAAATTCCTTTATTATCAAGTATTTGACCGAAGTACTAAATTTCAAGCCTGGGAATATAAGAAAAATAAATTCCATGAGTGACTACCCTGCTGCCTTTGATAACAAGGAAATAGAAGCCGCCTTCTTCGTCGCACCTCATGCTAAAGTCTTTCTAGCAAAGTACTCGTGTAAGGGATTTATCAAAGCAGGGAATACTTACAGGCTTGGTGGCTTTGGTTTTGTGTTTCCAAAAGGCTCAAGTCTAGCTGCCGACATATCAGAGGCATTGCTGAGTATGATAGAGAGTGGAGAAACAGAACAACTAGAAAAAGAAATGTTGAATGGGATAGAAAATGAAGGCAAAGCAAATTGTTCTGATTTAGCGAGCAAGGGAAAAAATAATTCATCGATAGGCCTTCCGCCTTACCTTGGTCTGTTTTCGATCTGTTCTACTGTCACTATTCTTGGTTTGTCATATTACGTGATTTGTTGGTTAGTGAAGAATGTAGAAACTTTGGCAAGCCACGCAGTTTTAACATTAACACAATTATGGAGAATATGGAGATGGACAACCAATATTTTTGCTAGGTGCTGTTCAAAAATGCAATCAAGGACCATGAGAAGAATAGGCAGCTGCACAGAAACAAGAAATGCAGAAGAGAATGTCACTGATAGCCAGCAAATCCCAGTGGTGGTTGAGCTTGTTGATACTGTACTGGCTGCTCATGCTTCATGA 2778 0.378 MGRNSSLQLIICFNIVLYLLAWSRVQTSHSLVLQRTTIMSIGAVLDLTSLMGKQQKIAMDIAVEEFNIDQFSSFNIDLQIKDSHRNSAQVIASVMELSQSNQVQAIIGTITHNEATLASEFSGTINTIPIMSLTSFSARPELLSPRLPHFIQVGDDINLHMQCISAIVGEFGWKKVTVIYELNNDFSSDPGILLSLSYSLKLVGSEIDNHLAFPSLSTLSDPKTTIENELHKLKKKSNRVFLIVHSSLELANMLCEKAKQIGLMEKGSVWIIPNEVAGLLDSVNSSVIFNMQGVVGFKTHFIEKSEAFREFKFKFQRKFSLEYPEEDNINPSIFALQAYDATKAIAKAANKSSQGKFSLTEFSKMTFLSNKFERLSGKTFSKKNGQLLQSPTFNIINVIGKSYREMASWSPALGFSKHIVNHNKVMEIRANNDDSDGVFKTVYWPGELQSVPKGHNNEQRSLKIAIPSNGAFTQFVNVEYDQGNNEPKVTGFSVSVFKAAVKRLPYVLNYKFFPFNGSYDEMVDHVYNKTLDAAVGDTSIVAYRYHLVEFSQPYIESGLHMVVTEQPAKSKETWMFLAAFTKEMWLMMTAMHVFVGFVIWLIEREVNEDLRGFGSMLWFLVTVLFYAHREPIRRPLAQVVLTPWLFAIFIVTNSFTASLTSITISQVKPSVLDIQTLKERNSPIGCDGNSFIIKYLTEVLNFKPGNIRKINSMSDYPAAFDNKEIEAAFFVAPHAKVFLAKYSCKGFIKAGNTYRLGGFGFVFPKGSSLAADISEALLSMIESGETEQLEKEMLNGIENEGKANCSDLASKGKNNSSIGLPPYLGLFSICSTVTILGLSYYVICWLVKNVETLASHAVLTLTQLWRIWRWTTNIFARCCSKMQSRTMRRIGSCTETRNAEENVTDSQQIPVVVELVDTVLAAHAS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1000g00014 925 Gene3D - 33 157 - -
Vivi1000g00014 925 Gene3D - 455 582 - -
Vivi1000g00014 925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 40 866 IPR015683 -
Vivi1000g00014 925 FunFam Glutamate receptor 573 705 - -
Vivi1000g00014 925 Pfam Bacterial extracellular solute-binding proteins, family 3 485 792 IPR001638 -
Vivi1000g00014 925 CDD GluR_Plant 462 794 - -
Vivi1000g00014 925 FunFam Glutamate receptor 457 572 - -
Vivi1000g00014 925 Pfam Receptor family ligand binding region 56 398 IPR001828 -
Vivi1000g00014 925 PIRSF IGluLR_plant 4 911 IPR017103 -
Vivi1000g00014 925 FunFam Glutamate receptor 160 329 - -
Vivi1000g00014 925 CDD PBP1_GABAb_receptor_plant 40 419 IPR044440 -
Vivi1000g00014 925 Pfam Ligand-gated ion channel 793 830 IPR001320 GO:0015276|GO:0016020
Vivi1000g00014 925 SUPERFAMILY Periplasmic binding protein-like II 458 791 - -
Vivi1000g00014 925 SUPERFAMILY Periplasmic binding protein-like I 39 454 IPR028082 -
Vivi1000g00014 925 Gene3D - 758 791 - -
Vivi1000g00014 925 SMART GluR_14 461 796 IPR001320 GO:0015276|GO:0016020
Vivi1000g00014 925 Gene3D - 662 757 - -
Vivi1000g00014 925 Gene3D - 158 330 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1000g00014 35 888 Ion Channels AT2G29100 30.371 3.59e-115 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1000g00014 - - vvo:131609067 1765.74