Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1000g00013 ATGGAAGAAGACAACAACTCTAATCCGATCGATCCGAAAACCGGGTTCAACTCCATATCCAAAACCTTCCACAGTCTACGGCCCCCACTCAACCTTCCTCCACCACACGCCTCCATCTCCGCCGCAACCTACATTCTCTCCCTCCGCCACAATTCACCTTCCTCCGACTCCCTCCCTTTCCTCATCGACTCAACCACATCTCACCAAATCTCTCACTCCAGCTTCATCCAACGCTCACAAACCCTCGCCACCAACCTCACCACCCTCCACGGACTCACCAAAAACCACACCGCATTGGTACTTTCCCCAAACATCATCCAGGTGCCAATCCTCTACTTCGCACTACTCTCCATTGGCGTGGTCCTTTCACCCGTTAACCCTGCTTCCTCTCCCTCCGAGATTTCTCACCTCATTAGCCTCTCGAAACCGATCATCGCTTTCACGACGTCGTTTTTGTTTCACAAACTTCCAAAACTCTCACTCGGAACGATTCTCATTGACTCGCCCGAGTTCGACTCACTCACCACTGAAGATAATAGTTCACCGGTATCGGTATCGGTATCGCCGGTTGTTAATCAATCCGACGTGGCTGCGATTCTGTACTCCTCGGGGACCACGGGGAAATCGAAAGGCGTAATGCTGACTCACCGGAACATTATGGCGTCGGTGGCGTCGTACAATGCCGTTAGGATTCCGACGGAGAGTCCTGCCGTGTGTTTGGCTGTGGTGCCTTATTTTCACGTGTATGGTTTTACCTACCTTTTCAAGTCGGTGGCTATGATGGAAACGTTGGTTGTGATGGAGAGGTTTGGATTGGAGAAAATGCTGCGTGCTTTCCAGAGGTTTCGAGTCACTAATCTTGCGGCGGCGCCGCCAGTTGTGGTGGCGATGAATAAAGAGAGAGCGACGGAGGGGTATGATTTGTCCTCATTGAAATGGGTGGCTTGTGGTGGTGCTCCGTTGGGAAAGGACAACTTGGATGCTTTCAAAGCAAAGTTCCCTCAAGTATCCATTCTCCAGGGATATGGGTTAACTGAATCAACCGCAGGTGTTATCCGAATAGTAGGTTCCGATGAGGCTAGCCGAGCAGGTACTACAGGTAGGCTGGGATCAGGGATGGAAGCTAAAATAGTGAACCCCAACACAGGAGAGTCCATGTCTCCTGGTGAAGAAGGAGAACTTTGGGTTAGAGGACCTCAAATAATGAAAGGTTATGTTGATGACCCAGTGGCAACTGCTGTTACTTTTGTGGATGGATGGTTGAGAACTGGCGATATTTGCTATTTTGACAACGAAGGTTTCGTCTATGTTGTAGACAGGTTGAAAGAATTGATCAAATATAAAGGTTACCAGGTGGCTCCTGCAGAGCTGGAACAATTACTCCAGTCTCACCAAGAGATAAAAGATGCTGCAGTTGTTCCATACCCTGATGAAGATGCTGGCCAGGTTCCCCTGGCGATTGTGGTAAGGCAACCTCAAAGCTGCTTGGGTGAAGCAGAAATAATAGATTTTGTAGCCAAACAGGTTGCACCATACAAGAAGATAAGGCGTGTGGTATTTGTCCATTCCATACCTAAGAATGCCTCAGGAAAGATACTGAGGAAGGAATTGTTGAATAAAATTCTCGCTCAACGAACATTTCCTAGGTTATAA 1653 0.4864 MEEDNNSNPIDPKTGFNSISKTFHSLRPPLNLPPPHASISAATYILSLRHNSPSSDSLPFLIDSTTSHQISHSSFIQRSQTLATNLTTLHGLTKNHTALVLSPNIIQVPILYFALLSIGVVLSPVNPASSPSEISHLISLSKPIIAFTTSFLFHKLPKLSLGTILIDSPEFDSLTTEDNSSPVSVSVSPVVNQSDVAAILYSSGTTGKSKGVMLTHRNIMASVASYNAVRIPTESPAVCLAVVPYFHVYGFTYLFKSVAMMETLVVMERFGLEKMLRAFQRFRVTNLAAAPPVVVAMNKERATEGYDLSSLKWVACGGAPLGKDNLDAFKAKFPQVSILQGYGLTESTAGVIRIVGSDEASRAGTTGRLGSGMEAKIVNPNTGESMSPGEEGELWVRGPQIMKGYVDDPVATAVTFVDGWLRTGDICYFDNEGFVYVVDRLKELIKYKGYQVAPAELEQLLQSHQEIKDAAVVPYPDEDAGQVPLAIVVRQPQSCLGEAEIIDFVAKQVAPYKKIRRVVFVHSIPKNASGKILRKELLNKILAQRTFPRL 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1000g00013 550 CDD 4CL 36 537 - -
Vivi1000g00013 550 Gene3D - 32 442 IPR042099 -
Vivi1000g00013 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 539 - -
Vivi1000g00013 550 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Vivi1000g00013 550 Gene3D - 443 544 IPR045851 -
Vivi1000g00013 550 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Vivi1000g00013 550 Pfam AMP-binding enzyme 59 447 IPR000873 -
Vivi1000g00013 550 SUPERFAMILY Acetyl-CoA synthetase-like 59 543 - -
Vivi1000g00013 550 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1000g00013 1 537 Monolignol Biosynthesis Gene Families AT5G63380 49.910 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1000g00013 K01904 - gmx:100801143 671.774