Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC611g00001 ATGTCTGGATTCCAGGGTTACGAGTTATGCAGCTTCATTTCAAAGAATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTCTACGACCATAAAGATTTTATTCTTGTTTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGAATTATGGAGAATGTCGTCTTCTTGGAGAGTTGTGGCATTCTTGGGACTCATCTTTCATTGCTACTCAAACTTCATCCAAGGCTTTTCGTTGCACAGCGGTCTACTATTGAAAACAATGTTTCTCGAGCTGTAGACTTGGGTTTTCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGTTGAAACTACTTAATTGTTTTGGTTTTTCGAAGGATGAGGGCCTGCAAATGTTCAAGAGAACCCCGACTTTGTTTAGAACATCAGAGAAGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCATACAGTTATGCTGCCCAAGTCAGTCCTTATTCACCAGCCTAAGATTTTAATGTACAACATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAACTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTCTTGGACAAGTATATATCACAGTTCAGAGAAAATGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAGGCATAA 777 0.3874 MSGFQGYELCSFISKNPSILTHSLKKTLVPSVEAIRKIVYDHKDFILVLHRCGWILPKYKRIMENVVFLESCGILGTHLSLLLKLHPRLFVAQRSTIENNVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLLNCFGFSKDEGLQMFKRTPTLFRTSEKKLKVGMKFFLHTVMLPKSVLIHQPKILMYNMEDRVLPRYKVFQLLKSKNLCKKVPSYIHVLCLSEEMFLDKYISQFRENAEELLVAYKGHYLEA 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC611g00001 258 Pfam mTERF 8 135 IPR003690 GO:0003690|GO:0006355
ViunNC611g00001 258 Pfam mTERF 125 233 IPR003690 GO:0003690|GO:0006355
ViunNC611g00001 258 SMART mt_12 10 41 IPR003690 GO:0003690|GO:0006355
ViunNC611g00001 258 SMART mt_12 80 110 IPR003690 GO:0003690|GO:0006355
ViunNC611g00001 258 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
ViunNC611g00001 258 SMART mt_12 114 144 IPR003690 GO:0003690|GO:0006355
ViunNC611g00001 258 SMART mt_12 181 212 IPR003690 GO:0003690|GO:0006355
ViunNC611g00001 258 PANTHER CGI-12 PROTEIN-RELATED 3 239 IPR003690 GO:0003690|GO:0006355
ViunNC611g00001 258 FunFam Mitochondrial transcription termination factor-like 24 244 - -
ViunNC611g00001 258 Gene3D Transcription termination factor 3, mitochondrial 57 244 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF ViunNC611g00001 mTERF 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC611g00001 K15032 - vvi:100268158 268.47