Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC610g00003 ATGGCCACTCTTCTTCTCAAACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTAGCCTCTCAAATCCACTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCCCTTTGCAGGAAGCCTCACGTTAATGTCGGAACTATTGGACACGTGGATCATGGGAAGACCACGCTAACTGCGGCAATCACCAAGGTGCTTGCGGATGAAGGGAAGGCTAAGGCTGTGGCATTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGTAACGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTGCCCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTCTACTTTACAGGGTACAAATGACGAGATTGGAAGACAGGCCATTCTAAAATTAATGGATGTTGTAGATGCATACATTCCTGACCCTGTTCGCGAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCATTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTGGGTCTAATGCAGGTTGGTTTGAAAAGTGTTCGATGCAAGGTATATGGTTTCTCGACAAACTTGGTTAAGCTCAAATGA 909 0.462 MATLLLKHSSSTSRRLFPLASQIHSSVSRSPLSTPLCRKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIVTAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSTLQGTNDEIGRQAILKLMDVVDAYIPDPVRELDKPFLMPIEDVFSIQGRGTVAIGRVEQGVIKVGEEVEVLGLMQVGLKSVRCKVYGFSTNLVKLK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC610g00003 302 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 39 235 IPR000795 GO:0003924|GO:0005525
ViunNC610g00003 302 CDD EF_Tu 40 234 IPR041709 -
ViunNC610g00003 302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 257 IPR027417 -
ViunNC610g00003 302 FunFam Elongation factor Tu 35 234 - -
ViunNC610g00003 302 Gene3D - 37 234 IPR027417 -
ViunNC610g00003 302 NCBIfam small GTP-binding protein domain 42 178 IPR005225 GO:0005525
ViunNC610g00003 302 Gene3D Translation factors 237 298 - -
ViunNC610g00003 302 Pfam Elongation factor Tu GTP binding domain 39 232 IPR000795 GO:0003924|GO:0005525
ViunNC610g00003 302 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 IPR031157 -
ViunNC610g00003 302 PRINTS GTP-binding elongation factor signature 43 56 IPR000795 GO:0003924|GO:0005525
ViunNC610g00003 302 PRINTS GTP-binding elongation factor signature 87 95 IPR000795 GO:0003924|GO:0005525
ViunNC610g00003 302 PRINTS GTP-binding elongation factor signature 107 117 IPR000795 GO:0003924|GO:0005525
ViunNC610g00003 302 PRINTS GTP-binding elongation factor signature 160 169 IPR000795 GO:0003924|GO:0005525
ViunNC610g00003 302 PRINTS GTP-binding elongation factor signature 123 134 IPR000795 GO:0003924|GO:0005525
ViunNC610g00003 302 PANTHER ELONGATION FACTOR TU-RELATED 38 281 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC610g00003 39 271 Eukaryotic Initiation Factors Gene Family AT5G60390 35.227 2.67e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC610g00003 K02358 - gmx:100776891 485.337