Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC610g00002 ATGCAGTATCTCAAGTCACACCATGCTGTTTCATCTTCTCTTTTCAATCAATTCTCTTATCACTCTATGACATTCTTCCTCTCTTTCTCAACCAAAAGCCGTTGCCTACACTTCAACGAAACCACTTCAATAATTGATTACCTGAATTCCGACTTGCAGTTCTCCAGAACCCAATCCCTTTATGTCTCCAAACGTGTTTCAGGGTGCAGATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCCCAAAGCCAGATTCTCTCCCTGATTCGTCAAAGACCCCAGATACTGTTTACAAACGTTGAGAAAATCTTGAGACCCAAAATTCAGCTCTTTCAGATGTCTGGATTCCAGGGTTACGAGTTATGCAGCTTCATTTCAAAGAATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATCGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTCTACGACCAGAAAGATTTTATTCTTGTTTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGAATTATGGAGAATGTCGTCTTCTTGGAGAGTTGTGGCATTCTTGGGACTCATCTTTCATTGCTACTCAAACTTCATCCAAGGCTTTTCGTTGCACAGCGGTCTACTATTGAAAACAATGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGTTGAAACTAATTAATTGTTTTGGTTTTTCGAAGGATGAGGGCCTGCAAATGTTCAAGAGAACCCCGACTTTGTTTAGAACATCAGAGAAGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCATACAGTTATGCTGCCCAAGTCAGTCCTTATTCACCAGCCTAAGATTTTAATGTACAGCATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAACTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTCTTGGACAAGTATATATCACAGTTCAGAGAAAATGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAGGCATAA 1134 0.3977 MQYLKSHHAVSSSLFNQFSYHSMTFFLSFSTKSRCLHFNETTSIIDYLNSDLQFSRTQSLYVSKRVSGCRFPQNPLSVLTFFKQIGFSQSQILSLIRQRPQILFTNVEKILRPKIQLFQMSGFQGYELCSFISKNPSILTHSLKKTSVPSVEAIRKIVYDQKDFILVLHRCGWILPKYKRIMENVVFLESCGILGTHLSLLLKLHPRLFVAQRSTIENNVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINCFGFSKDEGLQMFKRTPTLFRTSEKKLKVGMKFFLHTVMLPKSVLIHQPKILMYSMEDRVLPRYKVFQLLKSKNLCKKVPSYIHVLCLSEEMFLDKYISQFRENAEELLVAYKGHYLEA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC610g00002 377 FunFam Mitochondrial transcription termination factor-like 143 363 - -
ViunNC610g00002 377 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 SMART mt_12 300 331 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 Pfam mTERF 151 255 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 Pfam mTERF 79 167 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 Pfam mTERF 245 352 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 PANTHER CGI-12 PROTEIN-RELATED 41 358 IPR003690 GO:0003690|GO:0006355
ViunNC610g00002 377 Gene3D Transcription termination factor 3, mitochondrial 167 363 IPR038538 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF ViunNC610g00002 mTERF 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC610g00002 K15032 - csin:114301363 332.028