Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC610g00001 ATGCAGTCTCTCAAGTCACACCATGCTGTTTCATCTTCTCTTTTCAATCAATTCTCTTATCAGTCTATGACATTCTTCCTATCTTTCTCAACCAAAAGCCGTTGCCTACACTTCAACGAAACCACTTCAATAATTGATTACCTGAATTCCGACTTGCAGTTCTCCAGAACCCAATCCCTTTATGTCTCCAAACGTGTTTCAGGGTGCAGATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCCCAAAGCCAGATTCTCTCCCTGATTCGTCAAAGACCCCAGATACTGTTTACAAACGTTGAGAAAATCTTGAGACCCAAAATTCAGCTCTTTCAGATGTCTGGATTCCAGGGTTACGAGTTATGCAGCTTCATTTCAAAGAATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTCTACGACCAGAAAGATTTTATTCTTGTTTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGAATTATGGAGAATGTCGTCTTCTTGGAGAGTTGTGGCATTCTTGGGACTCATCTTTCATTGCTACTCAAACTTCATCCAAGGCTTTTCGTTGCACAGCGGTCTACTATTGAAAACAATGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTCATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGTTGAAACTAATTAATTGTTTTGGTTTTTCGAAGGATGAGGGCCTGCAAATGTTCAAGAGAACCCCGACTTTGTTTAGAACATCAGAGAAGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCATACAGTTATGCTGCCCAAGTCAGTCCTTATTCACCAGCCTAAGATTTTAATGTACACATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAACTGTTGA 984 0.3994 MQSLKSHHAVSSSLFNQFSYQSMTFFLSFSTKSRCLHFNETTSIIDYLNSDLQFSRTQSLYVSKRVSGCRFPQNPLSVLTFFKQIGFSQSQILSLIRQRPQILFTNVEKILRPKIQLFQMSGFQGYELCSFISKNPSILTHSLKKTLVPSVEAIRKIVYDQKDFILVLHRCGWILPKYKRIMENVVFLESCGILGTHLSLLLKLHPRLFVAQRSTIENNVSRAVDLGFRENSRMLVHAIHTLSCLSDKTFERKLKLINCFGFSKDEGLQMFKRTPTLFRTSEKKLKVGMKFFLHTVMLPKSVLIHQPKILMYTWRIACFLDIKSSNC 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC610g00001 327 Gene3D Transcription termination factor 3, mitochondrial 39 178 IPR038538 -
ViunNC610g00001 327 Pfam mTERF 79 231 IPR003690 GO:0003690|GO:0006355
ViunNC610g00001 327 Pfam mTERF 244 312 IPR003690 GO:0003690|GO:0006355
ViunNC610g00001 327 Pfam mTERF 151 255 IPR003690 GO:0003690|GO:0006355
ViunNC610g00001 327 PANTHER CGI-12 PROTEIN-RELATED 41 312 IPR003690 GO:0003690|GO:0006355
ViunNC610g00001 327 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
ViunNC610g00001 327 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
ViunNC610g00001 327 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
ViunNC610g00001 327 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF ViunNC610g00001 mTERF 5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC610g00001 K15032 - gmx:102661687 256.529