Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC541g00001 ATGTCGCCGCCTTCGTCGCCGTCGCCGCCGCCGCCGTCGCCGTCGCCGTCGCCGCCGCCGCCGTCGCCGCCGCCACCGTCACCGCCGTCGCCGCTGCCGCCGCCGTTATTTAATATGAGACAATGGGCCTTTGATATTTGCAGAGACTCAGGAAAGAAAATTGATGCTTTGGTTGCAGAGATAGGAATTGGAGGATCAATAACAAGTGCTAGAAAATTCTTCGAGCAGAAAAATCCAAACATCAAGAAGTACACTAACAACATGGTCAAAGAGCTTGCAAGGAGGTTGATGATTCAACTTGCAACTGACACTTGGGGATCTGATTTTCCAATCGGTGGAGTGATATCTAAGAAAATTCTCCCTCCATGTGTTCCCACTTTGTTGGAAGTCATGCGAGATCCACATGTAGTTGTAGATGGTTTTACTTATGAAGCTGATGCTATACAAGGATGGCTTAATGGTAGTAATGACAACTAA 477 0.4864 MSPPSSPSPPPPSPSPSPPPPSPPPPSPPSPLPPPLFNMRQWAFDICRDSGKKIDALVAEIGIGGSITSARKFFEQKNPNIKKYTNNMVKELARRLMIQLATDTWGSDFPIGGVISKKILPPCVPTLLEVMRDPHVVVDGFTYEADAIQGWLNGSNDN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC541g00001 158 SUPERFAMILY RING/U-box 125 156 - -
ViunNC541g00001 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 158 IPR013083 -
ViunNC541g00001 158 Gene3D - 37 119 IPR036052 -
ViunNC541g00001 158 MobiDBLite consensus disorder prediction 1 35 - -
ViunNC541g00001 158 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 34 90 IPR036052 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC541g00001 91 157 U-box Gene Family AT2G45910 43.478 1.94e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC541g00001 - K01738 vun:114170223 152.14