Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC499g00001 ATGGCCACTCTTCTTCTCAGACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTAGCCTCTCAAATCCACTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCCAGAAGCCTCACGTTAATGTCGGAACTATTGGACACGTGGACATTGGAAGACCACGCTAACTGCGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTATTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGTATGGAATCGCACTCTTTTGGTCTTGCAATCGATTGTGTTGTTTTCTGTTGATATGTATGCTTGCTCTATATTTCGGTTTTCAGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACACGGATTATGTTAAAAATATGATTACGGGAGCTGCCCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTCTGCTTTACAGGGTACAAATGACGAGATTGGAAGACAGGCCATTCTAAAATTAATGGATGCTGTAGATGCATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTGGGTCTAATGCAGGTATGTATGTTCATTGAGTCATTTCCTATATATAGCTGCCCTCTGATCCTTCCTGAACCATGCTTCCTCATGCTTGATGTACTTCTCAACTTCTTCTTCGAACTCTTGATAAAATTCGAAAACTGGTCGTTTAGGTTATCCCTAGCATTAGCCTCGTCATCATCTCGTAGTGGTACAGGTGTAACGTTGCTCTGCTCCCGACCGATGTGGGACACGGTTCTAAGTTTACCCTTGGCACGTCGAATGAAACTGTTGAAAGTTTCATCGTTATCAAGTGAGGTGTTATCTGAGTTCGCCGCACGACCATGTTGTCCCTTCCAAGCGCGTGTGGTCTCTACTGCTGGATTAGCAGCACGCCACCTCATCCTTGGATCATATCCAGCTTCACTTGAAGCAACTCTTGTTGGTTTGAAAAGTGTTCGATGCAAGGTATATGGTTTCTCGACAAACTTGGTTAAGCTCAAATGA 1359 0.4555 MATLLLRHSSSTSRRLFPLASQIHSSVSRSPLSTPRSLTLMSELLDTWTLEDHANCGKAKAVAFDEIDKAIEEKKRGITIATYGIALFWSCNRLCCFLLICMLALYFGFQAHVEYETAKRHYAHVDCPGHTDYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRQAILKLMDAVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQVCMFIESFPIYSCPLILPEPCFLMLDVLLNFFFELLIKFENWSFRLSLALASSSSRSGTGVTLLCSRPMWDTVLSLPLARRMKLLKVSSLSSEVLSEFAARPCCPFQARVVSTAGLAARHLILGSYPASLEATLVGLKSVRCKVYGFSTNLVKLK 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC499g00001 452 PANTHER ELONGATION FACTOR TU-RELATED 58 296 - -
ViunNC499g00001 452 Pfam Elongation factor Tu GTP binding domain 58 248 IPR000795 GO:0003924|GO:0005525
ViunNC499g00001 452 Gene3D Translation factors 253 303 - -
ViunNC499g00001 452 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 251 IPR000795 GO:0003924|GO:0005525
ViunNC499g00001 452 Gene3D - 38 250 IPR027417 -
ViunNC499g00001 452 SUPERFAMILY Translation proteins 252 295 IPR009000 -
ViunNC499g00001 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 266 IPR027417 -
ViunNC499g00001 452 PRINTS GTP-binding elongation factor signature 75 83 IPR000795 GO:0003924|GO:0005525
ViunNC499g00001 452 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
ViunNC499g00001 452 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
ViunNC499g00001 452 PRINTS GTP-binding elongation factor signature 176 185 IPR000795 GO:0003924|GO:0005525
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC499g00001 67 287 Eukaryotic Initiation Factors Gene Family AT5G60390 34.177 4.23e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC499g00001 K02358 - gmx:100791600 404.831