Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC43g00001 ATGCTTATTCCCCGGATATCATCATTGCTTCTTCTCCGGGAAAAGAAGTTCATACCCATAGGCCTTCTACCTTCACGCGGCATTGCTCCGTCAGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATTACACCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATTACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCCTAGTAAGAGGGGGGAGGGTTAAAGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG 486 0.4774 MLIPRISSLLLLREKKFIPIGLLPSRGIAPSAFAHCGKFPTATSRRSLGRVSVPVWLIILSDQLLIIALSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC43g00001 161 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 81 158 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC43g00001 161 SUPERFAMILY Nucleic acid-binding proteins 78 158 IPR012340 -
ViunNC43g00001 161 ProSitePatterns Ribosomal protein S12 signature. 86 93 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC43g00001 161 Gene3D - 66 160 IPR012340 -
ViunNC43g00001 161 CDD Ribosomal_S12 82 153 IPR005679 GO:0003735|GO:0006412|GO:0015935
ViunNC43g00001 161 PRINTS Ribosomal protein S12 signature 120 137 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC43g00001 161 PRINTS Ribosomal protein S12 signature 101 120 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC43g00001 161 PRINTS Ribosomal protein S12 signature 137 153 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC43g00001 161 PRINTS Ribosomal protein S12 signature 85 100 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC43g00001 161 PRINTS Ribosomal protein S12 signature 153 161 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC43g00001 161 Pfam Ribosomal protein S12/S23 77 156 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC43g00001 161 NCBIfam 30S ribosomal protein S12 75 158 IPR005679 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC43g00001 83 142 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 44.118 1.03e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC43g00001 K02950 - soe:130461791 253.832