Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC414g00001 ATGATGGGCCAGAAGTTTTGTGTGAACGAAGAAGACAAGGGTGTGTTAGAGTCTGTGTTGGGTGCAGAGGCTGTTGCGTTTTTCATTTCAGCACTTTCCAATAACGTCTTTTCCAGCGTTGTTGCTCCTTCTGTCGGTGCTGAGCCGTCCCACCGACAGAGGTTGTGCCAGCTTGTTGAGGGTTCCAAGTGGAACTATGCAGTGTTCTGGCAAGTTGCTGGTTTGAAATCTGGTGGTTCTGCCTTGATTTGGGGTGATGGGCATTGCAGTGATGCCAAAGGGAAGAGGAGTGGAATTGGGAAGGAGGATGAGCAGGAGTTGAGAAAGATGGTGCTGCAGAAGCTTGATGCCTGCTTTGGTGGGTATGTGTCGAAAGAGGCTAATTATGCAAGACTGGATAGGTTGTCTGATTTGCTCATGTTTTACTTATCCTCAATGTGTTATATATTCGGTTTTGATTCGCCATGTGGCCCTGGGAGTTCATTCAAATCTGGTAAATTGATTTGGACATCTGATGCTGCTGGTTGTTTAAATCAATTGGAATCTAGATCATTTCTAGGGAAAGTGGCTGGTCTTCAAACTGTTGCTTTTGTTCCTCTGAAATCTGGGGTGGTGGAGCTTGGTTCGAATGAAGTGGTGTCTGAAGAGCAGGGTTTTGTGGAGATGGTCAAGACAGCATTTGGGGAATCCAGTCCGGGACAAACTAAGGTGTTTCCGAAGATTTTTGGGCACGAGCTAAGCCTGGGGGATACAAAATCGCAGTCTATAACCATTAGTTTCTCCCCAAAGGTGGAAGATGATCCTGGTTTTACTTCAGACTCTTTTGAAGTTCAAGCACTGGGGGTGAACCATGCTTATGGAAATTCTTCCAATGGAACTTTAGGGGACAGTAGTGAAGGGAAGATGTTCCCTCAATTGAATCAAATGATGGGGGGGAATTTTAATGCTCAAGCAAGGGTTCCTTGTCTGGATCTCGGTAATGAAGACACGTCCTCAATTCATGCAGATGAGCGTAAGCCCAGAAAAAGAGGTAGAAAACCTGCCAATGGGAGAGAGGAACCACTGAATCATGTTGAAGCAGAGAGACAAAGACGTGAGAAGCTTAACCAGAGGTTCTACGCCTTAAGAGCTGTTGTCCCCAATATATCTAAAATGGACAAGGCATCTTTGCTTGGTGATGCCATTACCTTCATTACTGATCTCCAGATGAAGATCAAAGTATTGGAAGCTGAGAAGAACATGATTAACAACAAGGACCAGAGGTTATCCTTGCCAGATATGGATTTTCAGGAAAGAGAGGATGACACAGTTGTGACAGTGAGATGCCCTTTAGATACTCACCCTGTTTCTGATGTTGTTAAAACTTTCAGGGAGCATCAAATTGTGGCTCAAGACACTAATGTTTCTACTACAGATGATAAAATCATTCATACATTCTCCATAAGAACTGAGGGAGGGGAGGCTGCTGCCATACAGTTGAAAGAAAAGCTTGAAGCGGCCCTATCCAAAAATTGTCCATGA 1521 0.4458 MMGQKFCVNEEDKGVLESVLGAEAVAFFISALSNNVFSSVVAPSVGAEPSHRQRLCQLVEGSKWNYAVFWQVAGLKSGGSALIWGDGHCSDAKGKRSGIGKEDEQELRKMVLQKLDACFGGYVSKEANYARLDRLSDLLMFYLSSMCYIFGFDSPCGPGSSFKSGKLIWTSDAAGCLNQLESRSFLGKVAGLQTVAFVPLKSGVVELGSNEVVSEEQGFVEMVKTAFGESSPGQTKVFPKIFGHELSLGDTKSQSITISFSPKVEDDPGFTSDSFEVQALGVNHAYGNSSNGTLGDSSEGKMFPQLNQMMGGNFNAQARVPCLDLGNEDTSSIHADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITFITDLQMKIKVLEAEKNMINNKDQRLSLPDMDFQEREDDTVVTVRCPLDTHPVSDVVKTFREHQIVAQDTNVSTTDDKIIHTFSIRTEGGEAAAIQLKEKLEAALSKNCP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC414g00001 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
ViunNC414g00001 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
ViunNC414g00001 506 CDD ACT_UUR-ACR-like 436 503 - -
ViunNC414g00001 506 Coils Coil 398 418 - -
ViunNC414g00001 506 CDD bHLH_AtAIB_like 349 426 - -
ViunNC414g00001 506 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
ViunNC414g00001 506 Gene3D - 345 418 IPR036638 GO:0046983
ViunNC414g00001 506 MobiDBLite consensus disorder prediction 330 357 - -
ViunNC414g00001 506 MobiDBLite consensus disorder prediction 326 357 - -
ViunNC414g00001 506 FunFam Transcription factor bHLH13 345 419 - -
ViunNC414g00001 506 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 227 IPR025610 -
ViunNC414g00001 506 PANTHER MYC 49 500 IPR045084 GO:0003700|GO:0006355
ViunNC414g00001 506 SMART finulus 358 407 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC414g00001 2 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.638 7.49e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH ViunNC414g00001 bHLH-MYC_N 1.7e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC414g00001 - - gmx:100782107 916.376