Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC402g00004 ATGGAAGAACACGAGGAGAAAACCATCATCACCAAGTTCGCGAAATCCAAATTCTTCTTCCCCAAAGTTATTCGCATTTCAGCAACGGATCACAACGCCACAGACTCCTCTAGCGAAGAAGAAGACGACGAAGAAAAGCTTATTCACCTTCACAGAGTTAAGAGAGTGGTTAGTGAGATAAGAATTGTGCATGCAAACAAAACAAAAGGGCACAACAAAAACATGGACAATAACAACGATAGTTGTTGTTCGACCAAGTACAAGGAAGCTATGAAACAGCAACACCACCAACAAAAACAAGAGCACAAGTTTCGCGGCGTGCGGCAGCGGCCATGGGGACGGTGGGCCGCTGAGATAAGAGACCCTATACGGCGGAAACGAGTGTGGCTTGGAACCTTCGACACGGCAGAAGAAGCAGCTGTGGTTTACGACAGAGCAGCTATAAACCTCAGAGGTGCCGATGCTGTCACTAATTTCATCAAACCGCCGTTGAAAGAGTGTGAAAGTGGGGTTAAACGGAGGAGTTGTGGCGCATGTGCTTCACCCACTTCGGTTCTGTTGTTTCAGCCTTGGATGGAACCTTTGTCTTTGGAAGAAACATTCAAAGAAGAAGTGTTTGATGGGTTAAACGATGAAGTTGATAGTTTCTTGTTTTCTGATCATGCTCTTTATGAGCAACCTCTTCCTACTGTGTTTTCTAACATTGATGTTTCGTTGGATGAGGATCTTGAATCATGTAAATGGGATGTAGATAGCTTTTTCACTGATGATACTTTTCAATAA 783 0.4406 MEEHEEKTIITKFAKSKFFFPKVIRISATDHNATDSSSEEEDDEEKLIHLHRVKRVVSEIRIVHANKTKGHNKNMDNNNDSCCSTKYKEAMKQQHHQQKQEHKFRGVRQRPWGRWAAEIRDPIRRKRVWLGTFDTAEEAAVVYDRAAINLRGADAVTNFIKPPLKECESGVKRRSCGACASPTSVLLFQPWMEPLSLEETFKEEVFDGLNDEVDSFLFSDHALYEQPLPTVFSNIDVSLDEDLESCKWDVDSFFTDDTFQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC402g00004 260 SUPERFAMILY DNA-binding domain 103 159 IPR016177 GO:0003677
ViunNC402g00004 260 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
ViunNC402g00004 260 FunFam Ethylene-responsive transcription factor 2 102 161 - -
ViunNC402g00004 260 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
ViunNC402g00004 260 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 188 - -
ViunNC402g00004 260 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
ViunNC402g00004 260 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
ViunNC402g00004 260 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
ViunNC402g00004 260 CDD AP2 104 159 IPR001471 GO:0003700|GO:0006355
ViunNC402g00004 260 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC402g00004 5 207 AP2-EREBP Transcription Factor Family AT4G27950 41.126 5.10e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF ViunNC402g00004 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC402g00004 - - pvu:PHAVU_010G035200g 408.297