Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC399g00008 ATGTTTCATTCAAACTACAAACACAGAGTTCAGTATTCACCAAAATCAATGGGTAAAATTGTTGGTGTCGGTTTCCGTCCTACAGAACAAGAACTCGTCGATTTCTACCTCAAACACAAGTTGCTGGGTGATGATTCCCGTGTCGACGTTATCCCTGTCATTGACCTCTGCCATGTGGAACCTTCGGATGTACCAGGGATACTTGCAAAATCACGGATTCGATTCGGTGACCCAGATTGGTTTTTCTTCAGTCCGGTTGATTTCAAGTATTCAAACAGTAAAAGGGTTAACAGGAAAACCGAGAAAGGGTTCTGGAAAGCCACTGGAAAAGACCGTGATATTAGCAGCTGGAACACCAACACTCTCATTGCCACAAAGAAGAATCTTGTTTACTACACAGGAATTGTTTCCTGTGGTGTCAAGTCCTACTGGGTTATTCACGAATATCACGCTGTTACCTTTCATGAAAGCGAGAGGTGTTTTGTTTTATGCCGCTTGATGAGAAAATCTGGGAAAACAACTGAAGGGGGAACCGATCCACCAATCTGTGGTGAAGAGGAGCCCAGCATAATCAAGGTTTTTGACTATGAAAATCAGGCAACAGAAGAAGGAATTCCATATGGAGGTACTTTTTCAGGAGTGGAAACAATCTTTCTGGCTGATCCTCAGACAGAGACATACGTCTCCCAAATACAACCGTCTCCACGAGAAGAAGCATCTTTTCCAAATTATCCACTAAACAATGTCTGTTTTGGAAATGAAAAGAGCTTTATGCAAGATGAATACCTGAATCGAATTTTAGCCGATGAAAACTTAGATAATGATGAAGAAAGTAGTTGTACTTTTGTTGATAATTTTTCTCAAAAGGACACAAATATCGTGGATAGTTCATTTGTTCACGATAAATATTTCAATTATGACGAATACCATTCATCAAAAAGGTTGAAATTATCAAAAGATGTTGCTGATGATGCATCAACAAATCAAGAAACAAAAGAAAGTATGATTGGAGATGGATTTTGGAGAATGGAATCATCCTCTTGTGATTCAACTCCAAATGGAGTTTTGGAGATTAATTGCACTGAAGTTTCTAGTTCTCGGTCCATTTCATGA 1113 0.3926 MFHSNYKHRVQYSPKSMGKIVGVGFRPTEQELVDFYLKHKLLGDDSRVDVIPVIDLCHVEPSDVPGILAKSRIRFGDPDWFFFSPVDFKYSNSKRVNRKTEKGFWKATGKDRDISSWNTNTLIATKKNLVYYTGIVSCGVKSYWVIHEYHAVTFHESERCFVLCRLMRKSGKTTEGGTDPPICGEEEPSIIKVFDYENQATEEGIPYGGTFSGVETIFLADPQTETYVSQIQPSPREEASFPNYPLNNVCFGNEKSFMQDEYLNRILADENLDNDEESSCTFVDNFSQKDTNIVDSSFVHDKYFNYDEYHSSKRLKLSKDVADDASTNQETKESMIGDGFWRMESSSCDSTPNGVLEINCTEVSSSRSIS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC399g00008 370 SUPERFAMILY NAC domain 10 169 IPR036093 GO:0003677|GO:0006355
ViunNC399g00008 370 Gene3D NAC domain 28 173 IPR036093 GO:0003677|GO:0006355
ViunNC399g00008 370 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
ViunNC399g00008 370 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
ViunNC399g00008 370 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 21 230 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC399g00008 21 169 NAC Transcription Factor Family AT4G35580 46.753 5.18e-37 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC ViunNC399g00008 NAM 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC399g00008 - - var:108346924 553.903