Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC399g00006 ATGTTTCATTCAAACTACAAACACAGAGTTCAGTGTTCACCAAAATCAATGGGTAAAATTGTTGGTGTCGGTTTCCGTCCTATAGAACAAGAACTCGTCGATTTCTACCTCAAACACAAGTTGCTGGGTGATGATTCCCGTGTCGACGTTATCCCTGTCATTAACCTCTGCCATGTGGAACCTTCGGATGTACCAGGGATACTTGCAAAATCACGGATTCGATTTGGTGACCCAGACTGGTTTTTCTTCAGTCCGGTTGATTTCAAGTATTCAAACAGTAAAAGGGTTAACAGGAAAACCGAGAAAGGGTTCTGGAAAGCCACTGGAAAAGACCGTGATATTAGGAGCTGGAACACCAACACTCTCATTGCCACAAAGAAGAATCTTGTTTACTACAAAGGAAGTGTTTCCTGTGGTGTCAAGTCCGACTGGGTTATTCACGAATATCACGCTGTTACCTTTCATGAAAGCGAGAATGCTTTTGTGTTATGCCGCTTGATAAAGAAACCTGAGAAAAAAACTGAAGGAGGAACTGCTGCACTGATATGTGATGAAGGGGAATCCAGTAGAAGCGTGGTTTCTGACTATGAAAATCAGGCGATAGCAGAAGGAGTTCCATCCGGAGGTACTCTAACCGGAATGGAAACAATCTGTCACGTAACATATCAGGCAGAAAAATGCATCTCCCCTACAGAACCGTCACTAATTGAAATTGAGCAGGATGACGATGCCTATTTTAGAAATGAAAACAACAATGGGCGGAGTCCTTCTGAAATTATGCAGATTCCTTACGAAACTATGCACACTCCTTGTGAAACTATGCACACTCCTTATGAAATTATGCAGATTTCTTGTGAAACTATGCAGACTCTTTATGAAACTTTGCAGATTCCTTGTGAAACTATGCAAAGTTCTTGTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTTCTTTTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTTCTTTTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTTCTTTTGAAAGTATGCAGACTCCTTGTGAAACTATGCAGACTCCTTTTGAAAGTCTGCAGACTCCTTGTGAACCTGTACAGACTCTTTGTGAAAGTATGCAGATTTCTTGTGAAAGTATGCAGAATCCTTGTGAACCTATGCAGATTTCTTGTGAAACTATGCAGATTTCTCATGAAACCAACCAAATTCCTTTTGAAATTTTGCAGTTTCTTTTTGAAACTCCTTTTCAAACTATGCAAACTCCATTAGAAACTAAACAAATTCTACCTAAACTCCCGAATTCATTATTAGCCGATGAATATTTAGTCACTCAATCAAAGTCATTGAAAAGGGCATATTGCGAAAGCTCTTATAGAGATGCAGAAGTCGTCCCTGAACGGGACGCTAGTTTTGAGGATATTTCAAGTTTGTATACTGAGTATCTTAACTCAGAGGAATATCATGTATTAAAAAGGTTTAAAACATCATATGATGTTGGACATGGTGACACACATCTTCTATTTTCCGGCCAAGAAGCAAGTGAAGAGAAACAAGAAAGTATATTTCAAGATGATTTTTGGGGATTGGAGACATCCTCATGTGACTCTACAACAAATAAACTTGTGGAGATCAATTACAGTGAAATATCTAGCTTTCTTTGCACTTAA 1686 0.3921 MFHSNYKHRVQCSPKSMGKIVGVGFRPIEQELVDFYLKHKLLGDDSRVDVIPVINLCHVEPSDVPGILAKSRIRFGDPDWFFFSPVDFKYSNSKRVNRKTEKGFWKATGKDRDIRSWNTNTLIATKKNLVYYKGSVSCGVKSDWVIHEYHAVTFHESENAFVLCRLIKKPEKKTEGGTAALICDEGESSRSVVSDYENQAIAEGVPSGGTLTGMETICHVTYQAEKCISPTEPSLIEIEQDDDAYFRNENNNGRSPSEIMQIPYETMHTPCETMHTPYEIMQISCETMQTLYETLQIPCETMQSSCESMQTPCETMQTSFESMQTPCETMQTSFESMQTPCETMQTSFESMQTPCETMQTPFESLQTPCEPVQTLCESMQISCESMQNPCEPMQISCETMQISHETNQIPFEILQFLFETPFQTMQTPLETKQILPKLPNSLLADEYLVTQSKSLKRAYCESSYRDAEVVPERDASFEDISSLYTEYLNSEEYHVLKRFKTSYDVGHGDTHLLFSGQEASEEKQESIFQDDFWGLETSSCDSTTNKLVEINYSEISSFLCT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC399g00006 561 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
ViunNC399g00006 561 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 321 - -
ViunNC399g00006 561 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
ViunNC399g00006 561 SUPERFAMILY NAC domain 13 169 IPR036093 GO:0003677|GO:0006355
ViunNC399g00006 561 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC399g00006 21 176 NAC Transcription Factor Family AT4G35580 44.720 5.73e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC ViunNC399g00006 NAM 7.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC399g00006 - - vun:114167348 1053.51