Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC399g00003 ATGGATGATGTTGTAGGATTCGGTTTCCGTCCCACAGAAGAAGAACTTGTGGACTATTACCTCAGACATAGGTTGCTCGGTGATGATCCTCAAGTCCACGACGTCATCCCCGACATTGACCTTTGTCAAGTGGAACCTTGGGACGTGCCAATGTTATTGGGGGAATCAGATGCACAATTCGATTTCCCAGAATGGTTTTTCTTTAGTCCTGTTGATTTCAAGTATTCAAACAGTAAAAGAATTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACCGGAAAAGATCGTGAGATTAGAAGCTCCGACTCCAACACTCTCATTGCCACAAAGAAGACTCTTGTTTACTACAAAGGTCGCGTTTCACGTGGTCAGAAATCCAACTGGGTTATTCACGAATACCATGCTGTCACCTTTCACCAAAGCCAGAGGACTTTTGTTTTGTGTCGTCTGATGAAGAAACCTGGGGGAACAACTGAAGGTGGGGGTGATGAAGGGGAGAGCAGTAGAATCATGGTTTCTGGCTATCACAATCACTCAATAGGAACCACCTTTCAGCAAGACCAAACGTCTTTTCCAAACCCCTCATTTGACGATGCCCATTTTAGAAATGAATCTAACATTGAGCACAATTCATATGAAAATACCCAGGAAGAGGAATTCGTGAATTCTTTTTTTGTTGAGGACAATTATGTTAACAATGAAGAAAGTACAAATACCTACTTCAATACTTTCACCCAATCGGAGTCATTGAGAAAGGTATATGATACAGATGCTGAGGCCGTCTCTGAACAGGGTGATAATACTATGAATATTTCCACAGTGTGTAGTAAATATCCCAACTCAGACGAATACCATTCATCAAAAGAGTTTGATTCCGAATTATCAAACGTTGATGTCCATGAAGGTGTATGTATGCCATCTCCTATCCATGAAAAAAAACAAGAGAAAAAGAAGAAAAAGAAGAGCATATTTTCTTTCTTCTGA 987 0.4093 MDDVVGFGFRPTEEELVDYYLRHRLLGDDPQVHDVIPDIDLCQVEPWDVPMLLGESDAQFDFPEWFFFSPVDFKYSNSKRINRTTKCGFWKPTGKDREIRSSDSNTLIATKKTLVYYKGRVSRGQKSNWVIHEYHAVTFHQSQRTFVLCRLMKKPGGTTEGGGDEGESSRIMVSGYHNHSIGTTFQQDQTSFPNPSFDDAHFRNESNIEHNSYENTQEEEFVNSFFVEDNYVNNEESTNTYFNTFTQSESLRKVYDTDAEAVSEQGDNTMNISTVCSKYPNSDEYHSSKEFDSELSNVDVHEGVCMPSPIHEKKQEKKKKKKSIFSFF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC399g00003 328 SUPERFAMILY NAC domain 5 154 IPR036093 GO:0003677|GO:0006355
ViunNC399g00003 328 Gene3D NAC domain 12 157 IPR036093 GO:0003677|GO:0006355
ViunNC399g00003 328 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 218 - -
ViunNC399g00003 328 ProSiteProfiles NAC domain profile. 3 154 IPR003441 GO:0003677|GO:0006355
ViunNC399g00003 328 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC399g00003 5 155 NAC Transcription Factor Family AT4G35580 51.282 2.98e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC ViunNC399g00003 NAM 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC399g00003 - - vra:106753224 532.332