Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC399g00001 ATGGATGTTATAGGATTCGGTTTTCGTCCCACGGAAGAAGAACTTGTGGACTATTACCTCAGACATAGGTTGCTCGGTAATGATCCACAAGGCCATGTCATCCTCGACATTGACCTTTGTCAAGTGGAACCTTGGGACGTGCCAATGTATTTCGAGGAATCAGATGCACAATTCGATTTCCCAGAATGGTTTTTCTTTAGTCCTGTTGATTTCAAGTATCCAAACAGTAAAAGGATTAACCGGACAACCAAGTGTGGCTTCTGGAAACCCACCGGAAAAGATCGTGAGATTAGAAGCTCCGACTCCAACACTCTCATTGCCACAAAGAAGACTCTTGTTTACTACAAAGGTCGCGTTTCACGTGGTCAGAAATCCAACTGGGTTATTCACGAATACCATGCTGTCACCTTTCACCAAAGCCAGAGGACTTTTGTTTTGTGTCGTCTGATGAAGAAACCTGGGGGAACAACTGAAGGTGGGGGTGATGAAGGGGAGAGCAGTAGAATCATGGTTTTTGACTATCAGAATCACTCCATAGGAACCACCTTTCAGCAAGACCAGACGTCTTTTCCAAACCCCTCATTTTACGATGCCTATTTTAGAAATGAATCTAACATTGAGCACAATTCATATGAAAATACCAGGAACAGGAATTCGTGA 660 0.4348 MDVIGFGFRPTEEELVDYYLRHRLLGNDPQGHVILDIDLCQVEPWDVPMYFEESDAQFDFPEWFFFSPVDFKYPNSKRINRTTKCGFWKPTGKDREIRSSDSNTLIATKKTLVYYKGRVSRGQKSNWVIHEYHAVTFHQSQRTFVLCRLMKKPGGTTEGGGDEGESSRIMVFDYQNHSIGTTFQQDQTSFPNPSFYDAYFRNESNIEHNSYENTRNRNS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC399g00001 219 Pfam No apical meristem (NAM) protein 5 133 IPR003441 GO:0003677|GO:0006355
ViunNC399g00001 219 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
ViunNC399g00001 219 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 182 - -
ViunNC399g00001 219 Gene3D NAC domain 11 154 IPR036093 GO:0003677|GO:0006355
ViunNC399g00001 219 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC399g00001 4 159 NAC Transcription Factor Family AT4G35580 49.068 2.33e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC ViunNC399g00001 NAM 3.9e-28 No_clan