Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC386g00001 ATGGTGGAGATCCATGGCAACTTTCACCAGAACAAGCCTCACGTTAATGTCAGAACTATTGGACACGTGGATCATGGGAAGACCACGCTAACTGCGGCAATCACCAAGGTGCTTGCGGATGAAGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTACGCAAATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGTTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTTTGCTTTACAGGGTACAAATGACGAGATTGGAAGACAGGCCATTCTAAAATTAATGGATGCTGTAGATGCATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTGGGTCTAATGCAGGTTGGTTTGAAAAGTGTTCGATGCAAGGTATATGGTTTCTCGACAAACTTGGTTAAGCTCAAATGA 828 0.4541 MVEIHGNFHQNKPHVNVRTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGATQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALFALQGTNDEIGRQAILKLMDAVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQVGLKSVRCKVYGFSTNLVKLK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC386g00001 275 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
ViunNC386g00001 275 PRINTS GTP-binding elongation factor signature 96 107 IPR000795 GO:0003924|GO:0005525
ViunNC386g00001 275 PRINTS GTP-binding elongation factor signature 80 90 IPR000795 GO:0003924|GO:0005525
ViunNC386g00001 275 PRINTS GTP-binding elongation factor signature 60 68 IPR000795 GO:0003924|GO:0005525
ViunNC386g00001 275 PRINTS GTP-binding elongation factor signature 16 29 IPR000795 GO:0003924|GO:0005525
ViunNC386g00001 275 Gene3D - 5 207 IPR027417 -
ViunNC386g00001 275 FunFam Elongation factor Tu 3 207 - -
ViunNC386g00001 275 CDD EF_Tu 13 207 IPR041709 -
ViunNC386g00001 275 NCBIfam small GTP-binding protein domain 15 151 IPR005225 GO:0005525
ViunNC386g00001 275 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 IPR031157 -
ViunNC386g00001 275 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 12 208 IPR000795 GO:0003924|GO:0005525
ViunNC386g00001 275 PANTHER ELONGATION FACTOR TU-RELATED 8 254 - -
ViunNC386g00001 275 Gene3D Translation factors 210 271 - -
ViunNC386g00001 275 Pfam Elongation factor Tu GTP binding domain 12 205 IPR000795 GO:0003924|GO:0005525
ViunNC386g00001 275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 230 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC386g00001 10 244 Eukaryotic Initiation Factors Gene Family AT5G60390 34.586 4.68e-37 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC386g00001 K02358 - gmx:100776891 453.751