Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC35g00005 ATGATGGATAATGATGACAACATCTCTCATAAAGTTATTGAAGATCCTACAAGTGAGCTCGTAGAGAAAAATGCACATGCCTTGATCTTTCCATTCACTCATACTAGCCCCAGGAGAAAAAAGGAAAAAGTGCAGAAAACTAACACCAAGTTAACTAAGAGGAAATTAGAAGATCTTAATGTTGAAATTGTCACACTTGATAAAGATCTTAGCATTCTCAAACATCCATCCAATGCCTTTGAGCTTTTCTTGCAAGAATTTGCAAACAACTATAAAGAAACAAAAGTTGATTTAGATAATTTTGAAAGGGTTAAGAAAAAAGCTGTTAAGGCATGGAACTCTCTGACAAATAAAGAATTAGAGTCTTATTTCAATGCAGCAACTAAACTCAAAAGAAAATTACATTTGAGTACATTAAAGGAAAGTGTTGTTGAAGGAAAAGAAATAGGAAAAAGAGAGCGGAAACCTAAAATTCATTTTGACGGGACTGACTTGAAAAAATTGAAACAAGAGAAATCTCACAAGTTTGCTAAATGA 537 0.3277 MMDNDDNISHKVIEDPTSELVEKNAHALIFPFTHTSPRRKKEKVQKTNTKLTKRKLEDLNVEIVTLDKDLSILKHPSNAFELFLQEFANNYKETKVDLDNFERVKKKAVKAWNSLTNKELESYFNAATKLKRKLHLSTLKESVVEGKEIGKRERKPKIHFDGTDLKKLKQEKSHKFAK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC35g00005 178 Coils Coil 84 104 - -
ViunNC35g00005 178 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 39 148 - -
ViunNC35g00005 178 Gene3D High mobility group box domain 65 138 IPR036910 -
ViunNC35g00005 178 Pfam HMG (high mobility group) box 74 134 IPR009071 -
ViunNC35g00005 178 SUPERFAMILY HMG-box 68 133 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG ViunNC35g00005 HMG_box 2.2e-06 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC35g00005 - K21871 vun:114166702 350.517