Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC287g00004 ATGGGTCGTGCAAGAGTAACCTTAAAACAGATCTCGAGTGAAAGATGTCGCAAGACAACTTTGGCGCGAAGAAAGAGAGGACTGATGAAGAAAATGTGGGAATTTTCGAAGAGGTGCGGTGGTGAGCAGTGTTTGATTGTGTATGATGATGATGGTGATGTTGAAGCAGTGACTTCGCCCCAAAACCCTATAGAAATACATTCGATGATTCAAAAGTACTATGAAACTCAATTAAAGAATGGGAGACCTCACAAGACTTACGGTATTCAAGAGTTTTTTGAGAACAGAAAGAACATGATTGAAGCTGAGATTTCCAAAGTTCATAAAGAAATCAGCAGCATCAAGTACCCAACTTGGGATCCAAGTTTCGTGAACATGGAAGAGGATGAATTGAGGGCCTTCTGTGCTCATGTGGATGCCAAAATTCAAGCCTGTGATGAGGGAATTAAATTGTTGAAGAACAAGAATGTACCCAATCTGATGCAGAATTTCGATGAAAATAGTTATTGTTGA 513 0.3996 MGRARVTLKQISSERCRKTTLARRKRGLMKKMWEFSKRCGGEQCLIVYDDDGDVEAVTSPQNPIEIHSMIQKYYETQLKNGRPHKTYGIQEFFENRKNMIEAEISKVHKEISSIKYPTWDPSFVNMEEDELRAFCAHVDAKIQACDEGIKLLKNKNVPNLMQNFDENSYC 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC287g00004 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
ViunNC287g00004 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
ViunNC287g00004 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
ViunNC287g00004 170 Gene3D - 14 75 IPR036879 GO:0003677|GO:0046983
ViunNC287g00004 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
ViunNC287g00004 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
ViunNC287g00004 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
ViunNC287g00004 170 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC287g00004 1 143 Type I MADS-box Gene Family AT5G55690 33.784 3.20e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type ViunNC287g00004 SRF-TF 6.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC287g00004 - - vun:114171877 354.369