Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC197g00004 ATGTGGGACACGGTTCTAAGTTTACCCTTGGCACGTCGAATGAAACTGTTGAAAGTTTCATGTTATCAAGTGAGGTGTTATCTGAGTTCGCCGCACGACCATGTTGTCCCTTCCAAGCGCGTGTGGTTGGTTGAAAAGTGTTCGATGCAAGGTTTAGCTGTTGAGTCAGGACATCATAAGACGGGGCTGGAGGGCCACTGCAAGAAGCCTCACGTTAATGTCAGAACTATTGGACACGTGGATCATGGGAAGACCACGCTAACTGCGGCAATCACCAAGGTGCTTGCGGATGAAGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTACGCAAATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACAAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGTTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTTTGCTTTACAGGGTACAAATGACGAGATTGGAAGACAGGCCATTCTAACATTAATGGATGCTGTAGATGCATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTGGGTCTAATGCAGATTAATCAGAAACCTTTCATTAAAGACAAAACATCAATTTATATTAATTTCTTACAAACAAACAATAAACCAGTCAAAATTATTCCCCCCAAATAA 1029 0.4451 MWDTVLSLPLARRMKLLKVSCYQVRCYLSSPHDHVVPSKRVWLVEKCSMQGLAVESGHHKTGLEGHCKKPHVNVRTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGATQMDGGILVVSAPDGQMPQTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALFALQGTNDEIGRQAILTLMDAVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQINQKPFIKDKTSIYINFLQTNNKPVKIIPPK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC197g00004 342 Gene3D - 64 264 IPR027417 -
ViunNC197g00004 342 FunFam Elongation factor Tu 63 264 - -
ViunNC197g00004 342 Pfam Elongation factor Tu GTP binding domain 69 262 IPR000795 GO:0003924|GO:0005525
ViunNC197g00004 342 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 69 265 IPR000795 GO:0003924|GO:0005525
ViunNC197g00004 342 NCBIfam small GTP-binding protein domain 73 208 IPR005225 GO:0005525
ViunNC197g00004 342 PANTHER ELONGATION FACTOR TU-RELATED 63 337 - -
ViunNC197g00004 342 Pfam Elongation factor Tu domain 2 286 325 IPR004161 GO:0005525
ViunNC197g00004 342 PRINTS GTP-binding elongation factor signature 73 86 IPR000795 GO:0003924|GO:0005525
ViunNC197g00004 342 PRINTS GTP-binding elongation factor signature 137 147 IPR000795 GO:0003924|GO:0005525
ViunNC197g00004 342 PRINTS GTP-binding elongation factor signature 190 199 IPR000795 GO:0003924|GO:0005525
ViunNC197g00004 342 PRINTS GTP-binding elongation factor signature 117 125 IPR000795 GO:0003924|GO:0005525
ViunNC197g00004 342 PRINTS GTP-binding elongation factor signature 153 164 IPR000795 GO:0003924|GO:0005525
ViunNC197g00004 342 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 110 125 IPR031157 -
ViunNC197g00004 342 CDD EF_Tu 70 264 IPR041709 -
ViunNC197g00004 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 287 IPR027417 -
ViunNC197g00004 342 Gene3D Translation factors 267 327 - -
ViunNC197g00004 342 SUPERFAMILY Translation proteins 266 338 IPR009000 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC197g00004 68 301 Eukaryotic Initiation Factors Gene Family AT5G60390 35.094 7.27e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC197g00004 K02358 - gmx:100776891 445.277