Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC197g00003 ATGGCCACTCTTCTTCTCAGACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTAGCCTCTCAAATCCACTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCCAATGACTCCACCTCCACCTCCTTCTATTCTTTCAATTCCAATCCATGGTGGAGATCCATGGCAACTTTCACCAGAACGAACCCTCACGTTAATGTCGGAACTATTGGACACGTGGATCATGGGAAGACCGCGCTAACTGCGACAATCACCAAGGTGCTTGCAGATGAAGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTGCCCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGAGGCTATTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTCTGCTTTACAGGGTACAATTGACGAGATTGGAAGACAGGCCATTCTAAAATTAATGGATGTTGTAGATGCATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTGGTCTAA 906 0.4702 MATLLLRHSSSTSRRLFPLASQIHSSVSRSPLSTPNDSTSTSFYSFNSNPWWRSMATFTRTNPHVNVGTIGHVDHGKTALTATITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVEAIDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTIDEIGRQAILKLMDVVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC197g00003 301 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 258 IPR000795 GO:0003924|GO:0005525
ViunNC197g00003 301 Gene3D - 54 257 IPR027417 -
ViunNC197g00003 301 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
ViunNC197g00003 301 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
ViunNC197g00003 301 PRINTS GTP-binding elongation factor signature 183 192 IPR000795 GO:0003924|GO:0005525
ViunNC197g00003 301 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
ViunNC197g00003 301 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
ViunNC197g00003 301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 280 IPR027417 -
ViunNC197g00003 301 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
ViunNC197g00003 301 Gene3D Translation factors 260 301 - -
ViunNC197g00003 301 NCBIfam small GTP-binding protein domain 65 200 IPR005225 GO:0005525
ViunNC197g00003 301 PANTHER ELONGATION FACTOR TU-RELATED 58 300 - -
ViunNC197g00003 301 FunFam Elongation factor Tu 53 257 - -
ViunNC197g00003 301 CDD EF_Tu 63 257 IPR041709 -
ViunNC197g00003 301 Pfam Elongation factor Tu GTP binding domain 63 255 IPR000795 GO:0003924|GO:0005525
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC197g00003 64 294 Eukaryotic Initiation Factors Gene Family AT5G60390 32.567 2.29e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC197g00003 K02358 - gmx:100791600 526.168