Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC197g00002 ATGCAGTCTCTCAAGTCACACCATGCTGTTTCATCTTCTCTTTTCAATCAATTCTCTTATCAGTCTATGACATTCTTCCTCTCTTTCTCAACCAAAAGCCGTTGCCTACACTTCAACGAAACCATTTCATTAATTGATTACCTGAATTCCGACTTGCAGTTCTCCAGAACCCAATCCCTTTATGTCTCCAAACGTGTTTCAGGGTGCAGATTCCCTCAAAACCCCTTATCAGTGCTCACTTTCTTCAAACAAATAGGCTTTTCCCAAAGCCAGATTCTCTCCCTGATTCGTCAAATACCCCAGATACTGTTTACAAACGTTGAGAAAATCTTGAGACCCAAAATTCAGCTCTTTCAGATGTCTGGATTCCAGGGTTACGAGTTATGCAGCTTCATTTCAAAGAATCCCTCCATTTTGACTCATAGCTTGAAGAAAACATTGGTCCCCTCAGTTGAAGCTATTAGGAAAATTGTCTACGACCAGAAAGATTTTATTCTTGTTTTGCACAGATGTGGCTGGATACTCCCAAAGTACAAAAGAATTATGGAGAATGTCGTCTTCTTGGAGAGTTGTGGCATTCTTGGGACTCATCTTTCATTGCTACTCAAACTTCATCCAAGGCTTTTCGTTGCACAGCGGTCTACTATTGAAAACAATGTTTCTCGAGCTGTAGACTTGGGTTTCCGTGAAAATTCAAGAATGCTTGTCCATGCAATTTATACATTAAGTTGTTTGAGCGATAAAACATTTGAGAGAAAGTTGAAACTTTTTTTTGGTTTTTCGAAGGATGAGGGCCTGCAAATGTTCAAGAGAACTCCGACTTTGTTTAGAACATCAGAGAAGAAGTTGAAAGTTGGAATGAAATTCTTCTTGCATACAGTTATGCTGCCCAAGTCAGTCCTTATTCACCAGCCTAGGATTTTAATGTACAGCATGGAGGATCGCGTGCTTCCTCGATATAAAGTCTTCCAACTGTTGAAATCAAAAAATCTCTGCAAGAAAGTCCCCAGTTATATTCATGTGTTGTGCTTGTCTGAGGAGATGTTCTTGGACAAGTATATATCACAGTTCAGAGAAAATGCAGAGGAGTTATTAGTAGCATACAAGGGTCATTATCTGGAGGCATAA 1128 0.3963 MQSLKSHHAVSSSLFNQFSYQSMTFFLSFSTKSRCLHFNETISLIDYLNSDLQFSRTQSLYVSKRVSGCRFPQNPLSVLTFFKQIGFSQSQILSLIRQIPQILFTNVEKILRPKIQLFQMSGFQGYELCSFISKNPSILTHSLKKTLVPSVEAIRKIVYDQKDFILVLHRCGWILPKYKRIMENVVFLESCGILGTHLSLLLKLHPRLFVAQRSTIENNVSRAVDLGFRENSRMLVHAIYTLSCLSDKTFERKLKLFFGFSKDEGLQMFKRTPTLFRTSEKKLKVGMKFFLHTVMLPKSVLIHQPRILMYSMEDRVLPRYKVFQLLKSKNLCKKVPSYIHVLCLSEEMFLDKYISQFRENAEELLVAYKGHYLEA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC197g00002 375 Pfam mTERF 79 167 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 Pfam mTERF 151 256 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 Pfam mTERF 256 350 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 PANTHER CGI-12 PROTEIN-RELATED 43 356 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 Gene3D Transcription termination factor 3, mitochondrial 159 361 IPR038538 -
ViunNC197g00002 375 SMART mt_12 298 329 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 SMART mt_12 199 229 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
ViunNC197g00002 375 FunFam Mitochondrial transcription termination factor-like 143 361 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF ViunNC197g00002 mTERF 3.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC197g00002 K15032 - csin:114301363 332.413