Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC197g00001 ATGGCCACTCTTCTTCTCAGACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTAGCCTCTCAAATCCACTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCCAATGACTCCACCTCCACCTCCTTCTATTCTTTCAATTTCAATCCATGGTGGAGATCCATGGCAACTTTCACCAGAACGAAGCCTCACGTTAATGTCGAAACTATTGGACACGTGGATCATGGGAAGACCACGCTAAATGCGGCAATCACCAAGGTGCTTGCGGATGAAGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTACCCATATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCATGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTCTGCTTTACAGGGTACAAATGACGAGATTGGAAGACAGGCCATTCTAAAATTAATGGATGTTGTAGATGCATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTAGGTCTAATGCAGGAACCATGCTTCCTCATGCTTGATGTACTTCTCAACTTCTTCTTCGAACTCTTGATAAAATTCGAAAACTGGTCGTTTAGGTTATCCCTAGCATTAGCCTCGTCATCATCTCGTAGTGGTACAGGTGTAACGTTGCTCTGCTCCCGACCGATGTGGGACACGGTTCTAATTTTACCCTTGGCACGTCGAATGAAACTGTTGAAAGTTTCATCGTTATCAAGTGAGGTGTTATCTGAGTTCGCCGCACGACCATGTTATCCCTTCCAAGCGCGTGTGGTCTCTACTGCTGGATTAGCAGCACGCCACCTCATCCTTGGATCATATCCAGCTTCACTTGAAGCAACTCTTGTTGCCTTTCCATGA 1275 0.4659 MATLLLRHSSSTSRRLFPLASQIHSSVSRSPLSTPNDSTSTSFYSFNFNPWWRSMATFTRTKPHVNVETIGHVDHGKTTLNAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGATHMDGGILVVSAPDGPMPQTKEHILLARHVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRQAILKLMDVVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQEPCFLMLDVLLNFFFELLIKFENWSFRLSLALASSSSRSGTGVTLLCSRPMWDTVLILPLARRMKLLKVSSLSSEVLSEFAARPCYPFQARVVSTAGLAARHLILGSYPASLEATLVAFP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC197g00001 424 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
ViunNC197g00001 424 PRINTS GTP-binding elongation factor signature 183 192 IPR000795 GO:0003924|GO:0005525
ViunNC197g00001 424 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
ViunNC197g00001 424 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
ViunNC197g00001 424 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
ViunNC197g00001 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 280 IPR027417 -
ViunNC197g00001 424 NCBIfam small GTP-binding protein domain 66 201 IPR005225 GO:0005525
ViunNC197g00001 424 Gene3D - 54 257 IPR027417 -
ViunNC197g00001 424 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 258 IPR000795 GO:0003924|GO:0005525
ViunNC197g00001 424 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
ViunNC197g00001 424 Gene3D Translation factors 260 308 - -
ViunNC197g00001 424 FunFam Elongation factor Tu 53 257 - -
ViunNC197g00001 424 PANTHER ELONGATION FACTOR TU-RELATED 57 305 - -
ViunNC197g00001 424 CDD EF_Tu 63 257 IPR041709 -
ViunNC197g00001 424 Pfam Elongation factor Tu GTP binding domain 62 255 IPR000795 GO:0003924|GO:0005525
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC197g00001 60 294 Eukaryotic Initiation Factors Gene Family AT5G60390 34.211 6.46e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC197g00001 K02358 - gmx:100791600 518.464