Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC182g00001 ATGGCCACTCTTCTTCTCAGACACTCCTCTTCCACTTCTCGCCGCCTCTTCCCCTTAGCCTCTCAAATCCACTCTTCCGTATCTCGTTCTCCTCTCTCTACTCCCAGTGACTCCACCTCCACCTCCTTCTATTCTTTCAATTCCAATCCATGGTGGAGATCCATGGCAACTTTCACCAGAACGAAGCCTCACGTTAATGTCGGAACTATTGGACACGTGGATCATGGGAAGACCACGCTAACTGCGGCAATCACCAAGGTGCTTGCGGATGAAGGGAAGGCTAAGGCTGTGGCCTTTGATGAAATTGACAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACCATTGCAACGGCTCATGTGGAGTATGAGACTGCAAAACGACATTATGCGCATGTGGACTGCCCTGGACACGCGGATTATGTTAAAAATATGATTACGGGAGCTGCCCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTTTGCTTTCTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGTTACGTGAGCTACTGAGCTTCTACAAGTTCCCTGGGGATGAAATCCCGATCATTAGAGGTTCAGCGTTGTCTGCTTTACAGGGTACAAATGACGAGATTGGAAGACAGGCCATTCTAAAATTAATGGATGTTGTAGATGCATACATTCCTGACCCTGTTCGCCAACTTGACAAGCCCTTCCTAATGCCAATTGAAGATGTGTTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGCGTCATTAAAGTCGGTGAAGAAGTAGAGGTGTTGGGTCTAATGCAGGTATGTATGTTCATTGAGTCATTTCCTATATATAGCTGCCCTCTGATCCTTCCTGTTGGTTTGAAAAGTGTTCGATGCAAGGTATATGGTTTCTCGACAAACTTGGTTAAGCTCAAATGA 1032 0.4632 MATLLLRHSSSTSRRLFPLASQIHSSVSRSPLSTPSDSTSTSFYSFNSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGRQAILKLMDVVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGEEVEVLGLMQVCMFIESFPIYSCPLILPVGLKSVRCKVYGFSTNLVKLK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC182g00001 343 PANTHER ELONGATION FACTOR TU-RELATED 57 303 - -
ViunNC182g00001 343 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
ViunNC182g00001 343 PRINTS GTP-binding elongation factor signature 183 192 IPR000795 GO:0003924|GO:0005525
ViunNC182g00001 343 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
ViunNC182g00001 343 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
ViunNC182g00001 343 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
ViunNC182g00001 343 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 258 IPR000795 GO:0003924|GO:0005525
ViunNC182g00001 343 Gene3D - 54 257 IPR027417 -
ViunNC182g00001 343 Pfam Elongation factor Tu GTP binding domain 62 255 IPR000795 GO:0003924|GO:0005525
ViunNC182g00001 343 FunFam Elongation factor Tu 53 257 - -
ViunNC182g00001 343 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
ViunNC182g00001 343 NCBIfam small GTP-binding protein domain 65 201 IPR005225 GO:0005525
ViunNC182g00001 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 280 IPR027417 -
ViunNC182g00001 343 CDD EF_Tu 63 257 IPR041709 -
ViunNC182g00001 343 Gene3D Translation factors 260 311 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC182g00001 60 294 Eukaryotic Initiation Factors Gene Family AT5G60390 34.962 4.85e-37 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC182g00001 K02358 - gmx:100791600 514.227