Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC177g00001 ATGGTCAAAAAGATAGGCGAAGCAAGCTTGGGAGATGCATTTTCTGTGAATCTATGTGAGTTGCTTCTTGAACTATTCGACAACATCATTTGTAAATGTGCTCTTGGACAGAAGTACACTAACAACATGGTCAAAGAGCTTGCAAGGAGGTTGATGATTCAACTTGCAGCTGACACTTGGGGATCTGATTTTCCAATCGGTGGAGTGATATCTAAGAAAATTCTCCCTGCATGTGTTCCCACTTTGTTGGAAGTCATGCGAGATCCACATGTAGATGTAGATGGTTTTACTTATGAAGCTGAGGCTATACAAGGATGGCTTAATGGTAGTAATGACAACTCACCAATGACTAATGATAAGCTTGACCCTCACAATCTTGTTCCCAATTATGCTCTTCGTTCTGCAATCCATGACCGGCTTCAAAACCGTCAAAATATGATGTATTTTGTGACTGTTTTTAACCGACAAAATATGATGAAATATAAATAA 489 0.3906 MVKKIGEASLGDAFSVNLCELLLELFDNIICKCALGQKYTNNMVKELARRLMIQLAADTWGSDFPIGGVISKKILPACVPTLLEVMRDPHVDVDGFTYEAEAIQGWLNGSNDNSPMTNDKLDPHNLVPNYALRSAIHDRLQNRQNMMYFVTVFNRQNMMKYK 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC177g00001 162 CDD RING-Ubox_WDSUB1-like 78 129 - -
ViunNC177g00001 162 SUPERFAMILY RING/U-box 80 143 - -
ViunNC177g00001 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 152 IPR013083 -
ViunNC177g00001 162 PANTHER WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 84 145 - -
ViunNC177g00001 162 Pfam U-box domain 80 144 IPR003613 GO:0004842|GO:0016567
ViunNC177g00001 162 ProSiteProfiles U-box domain profile. 73 146 IPR003613 GO:0004842|GO:0016567
ViunNC177g00001 162 SMART Ubox_2 80 139 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC177g00001 50 142 U-box Gene Family AT2G45910 47.368 2.09e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC177g00001 - - vun:114170223 315.079