Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC12g00083 ATGGCGATACATTTATACAAAACTTCTACCCCAAGCACACGCAATGGAACCGTAGACAGTCAAGTAAAATCCAATCCACGAAATCATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATAATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTCAAATTGATTTTCGACGGAATGAAAAAAACATATATGGTAGAATCGTAACCATAGAATATGACCCTAATCGAAATGCATCCATTTGTCTCATACACTATGGGGATGGTGAGAAAAAATATATTTTACACCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATCAAAATGGGAAATGCCCTACCTTTGAGTGAGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCTGGTGCTGTAGCGAAACTAATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCGGCAACAGTTGGACAAGTGGGAAATGTTGGGGTAAACCAGAAAAATTTAGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAACGTCCTATAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCGCATGGGGGTGGTGAAGGGAGGGCCCCCATTGGTAGAAAAAAACCCGCAACTCCTTGGGGTTTTCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAAGAAATATAGTGATAATTTGATTCTTCGTCGTCGTACTAAATAG 864 0.4213 MAIHLYKTSTPSTRNGTVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLSEVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGFPALGRRSRKRKKYSDNLILRRRTK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC12g00083 287 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 13 287 IPR002171 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00083 287 Gene3D - 1 112 IPR012340 -
ViunNC12g00083 287 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00083 287 SMART Ribosomal_L2_C_2 122 264 IPR022669 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00083 287 FunFam 50S ribosomal protein L2 207 287 - -
ViunNC12g00083 287 PANTHER RIBOSOMAL PROTEIN L2 36 285 IPR002171 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00083 287 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
ViunNC12g00083 287 SUPERFAMILY Translation proteins SH3-like domain 145 284 IPR008991 -
ViunNC12g00083 287 Gene3D - 116 207 IPR014722 -
ViunNC12g00083 287 MobiDBLite consensus disorder prediction 267 287 - -
ViunNC12g00083 287 MobiDBLite consensus disorder prediction 1 24 - -
ViunNC12g00083 287 FunFam 50S ribosomal protein L2, chloroplastic 116 207 - -
ViunNC12g00083 287 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00083 287 MobiDBLite consensus disorder prediction 236 287 - -
ViunNC12g00083 287 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
ViunNC12g00083 287 NCBIfam 50S ribosomal protein L2 3 286 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
ViunNC12g00083 287 Hamap 50S ribosomal protein L2 [rplB]. 1 286 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
ViunNC12g00083 287 Gene3D Ribosomal protein L2, domain 3 208 286 IPR014726 -
ViunNC12g00083 287 Pfam Ribosomal Proteins L2, C-terminal domain 145 262 IPR022669 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00083 287 ProSitePatterns Ribosomal protein L2 signature. 229 240 IPR022671 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC12g00083 51 246 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 33.019 5.01e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC12g00083 K02886 - cave:30215254 547.74