Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC12g00079 ATGTCACGGCGAGGTACTGCAGAAGAAAAAACCGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTCTCTATCGAGCTATGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGCGTAGGCGGATCAACTCATCAAGTTCCCGTTGAAATAGGATCCGCACAAGGAAAAGCACTTGCCATTCGTTGGTTATTGGGGGCATCCCGAAAACGTCCGGGTCGAAATATGGCTTTCAAATTAAGTTCCGAATTAGTGGATGCTGCCAAAGGTAGTGGCGATGCCATACGCAAAAAGGAAGAGACTCATAGAATGGCAGAGGCAAATAGAGCTTTTGCACATTTTCGTTAA 468 0.4145 MSRRGTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAMKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPVEIGSAQGKALAIRWLLGASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC12g00079 155 CDD uS7_Chloroplast 10 154 - -
ViunNC12g00079 155 FunFam 30S ribosomal protein S7 1 155 - -
ViunNC12g00079 155 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 155 IPR000235 GO:0006412
ViunNC12g00079 155 ProSitePatterns Ribosomal protein S7 signature. 20 46 IPR020606 GO:0003723|GO:0003735|GO:0006412
ViunNC12g00079 155 Gene3D Ribosomal protein S7 domain 1 155 IPR036823 -
ViunNC12g00079 155 Pfam Ribosomal protein S7p/S5e 1 149 IPR023798 -
ViunNC12g00079 155 NCBIfam 30S ribosomal protein S7 3 155 IPR005717 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00079 155 SUPERFAMILY Ribosomal protein S7 2 149 IPR036823 -
ViunNC12g00079 155 Hamap 30S ribosomal protein S7 [rpsG]. 1 155 IPR005717 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00079 155 PANTHER RIBOSOMAL PROTEIN S7 5 149 IPR000235 GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC12g00079 22 149 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 35.252 1.83e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC12g00079 K02992 - cave:30215261 301.597