Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC12g00058 GTGACGCGTTCACTAAAAAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATAAAGAAGCTTAACACAAAAGCGGAAAAAGATATAATATTAACTTGGTCCAGAGCATCTACCATTATACCTACAATGATTGGCCATACCATTGCTATCCATAATGGAAAAGAACATTTACCTATTTATATAACAGATCGTATGGTAGGCCATAAATTAGGAGAATTTTCACCTACTCTAAACTTCCGAGGACATGCGAAAAATGATAATAGATCTCGTCGTTAA 279 0.3297 MTRSLKKNPFVANHLLRKIKKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
ViunNC12g00058 92 SUPERFAMILY Ribosomal protein S19 3 85 IPR023575 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 Hamap 30S ribosomal protein S19 [rpsS]. 1 89 IPR002222 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 ProSitePatterns Ribosomal protein S19 signature. 53 77 IPR020934 GO:0003723
ViunNC12g00058 92 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 86 IPR002222 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 Gene3D 30s Ribosomal Protein S19; Chain A 1 92 IPR023575 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 Pfam Ribosomal protein S19 3 83 IPR002222 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 1 92 IPR002222 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 PRINTS Ribosomal protein S19 family signature 33 52 IPR002222 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 PRINTS Ribosomal protein S19 family signature 53 65 IPR002222 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 PRINTS Ribosomal protein S19 family signature 65 80 IPR002222 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00058 92 FunFam 30S ribosomal protein S19 1 92 - -
ViunNC12g00058 92 NCBIfam 30S ribosomal protein S19 1 92 IPR005732 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC12g00058 3 78 Cytoplasmic Ribosomal Protein Gene Family AT5G63070 39.241 7.98e-12 55.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC12g00058 K02965 - gmx:3989336 187.578