Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC12g00055 ATGGCAAAATCAATACCTAAAAAAGGTTCGCGTAAAAATGTACGTATTGGTTCGCGTAATCATACTCGTAAAATACCAAAGGGAATTATTCATGTTCAAGCTAGTTTCAACAATACTATTGTGACTATTACAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCCGCGGGTACTTGTGGATTCAAGGGTACACGAAGGGGAACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCAGAAATCATGATAAAAGGGCCTGGCCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTAGGTCTCCTAAAAAAAGACGTGTATAA 417 0.4077 MAKSIPKKGSRKNVRIGSRNHTRKIPKGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRV 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC12g00055 138 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00055 138 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
ViunNC12g00055 138 Gene3D Ribosomal protein S11 8 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00055 138 Hamap 30S ribosomal protein S11 [rpsK]. 3 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00055 138 NCBIfam 30S ribosomal protein S11 21 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00055 138 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 3 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00055 138 FunFam 30S ribosomal protein S11, chloroplastic 11 138 - -
ViunNC12g00055 138 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 7 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00055 138 SUPERFAMILY Translational machinery components 23 138 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC12g00055 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 32.117 9.80e-15 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC12g00055 K02948 - gmx:3989330 269.24