Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC12g00046 ATGCCAACTATGAAACAACTTATTAGAAACACAAGACAGCCAATCCGAAACGTCACAAAATCCCCAGCTCTTCGGGGATGCCCTCAACGCCGAGGAACGTGTACCAGGGTGTATACTATTACACCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATTACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCCTAGTAAGAGGGGGGAGGGTTAAAGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTTATGGTGCCAAAAAGCCAAAATAA 369 0.439 MPTMKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSYGAKKPK 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC12g00046 122 CDD Ribosomal_S12 3 110 IPR005679 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00046 122 PRINTS Ribosomal protein S12 signature 77 94 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 PRINTS Ribosomal protein S12 signature 58 77 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 PRINTS Ribosomal protein S12 signature 42 57 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 PRINTS Ribosomal protein S12 signature 27 42 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 PRINTS Ribosomal protein S12 signature 94 110 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 PRINTS Ribosomal protein S12 signature 110 122 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 Hamap 30S ribosomal protein S12 [rpsL]. 1 122 IPR005679 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00046 122 Gene3D - 1 122 IPR012340 -
ViunNC12g00046 122 FunFam 30S ribosomal protein S12, chloroplastic 1 122 - -
ViunNC12g00046 122 SUPERFAMILY Nucleic acid-binding proteins 2 122 IPR012340 -
ViunNC12g00046 122 ProSitePatterns Ribosomal protein S12 signature. 43 50 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 10 122 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 1 122 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00046 122 NCBIfam 30S ribosomal protein S12 1 122 IPR005679 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00046 122 Pfam Ribosomal protein S12/S23 13 122 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC12g00046 17 99 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 38.462 6.67e-10 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC12g00046 K02950 - gmx:3989256 244.588