Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC12g00045 ATGCCAACTATGAAACAACTTATTAGAAACACAAGACAGCCAATCCGAAACGTCACAAAATCCCCAGCTCTTCGGGGATGCCCTCAACGCCGAGGAACGTGTACCAGGGTGTATCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATTACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCCTAGTAAGAGGGGGGAGGGTTAAAGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTTATGGTGCCAAAAAGCCAAAATAA 360 0.4444 MPTMKQLIRNTRQPIRNVTKSPALRGCPQRRGTCTRVYPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSYGAKKPK 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC12g00045 119 NCBIfam 30S ribosomal protein S12 1 119 IPR005679 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00045 119 SUPERFAMILY Nucleic acid-binding proteins 2 119 IPR012340 -
ViunNC12g00045 119 Gene3D - 1 119 IPR012340 -
ViunNC12g00045 119 PRINTS Ribosomal protein S12 signature 55 74 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00045 119 PRINTS Ribosomal protein S12 signature 74 91 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00045 119 PRINTS Ribosomal protein S12 signature 91 107 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00045 119 PRINTS Ribosomal protein S12 signature 21 36 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00045 119 PRINTS Ribosomal protein S12 signature 107 119 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00045 119 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 1 119 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00045 119 CDD Ribosomal_S12 3 107 IPR005679 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00045 119 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 10 119 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00045 119 Hamap 30S ribosomal protein S12 [rpsL]. 1 119 IPR005679 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00045 119 FunFam 30S ribosomal protein S12, chloroplastic 1 119 - -
ViunNC12g00045 119 Pfam Ribosomal protein S12/S23 13 119 IPR006032 GO:0003735|GO:0005840|GO:0006412
ViunNC12g00045 119 ProSitePatterns Ribosomal protein S12 signature. 40 47 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC12g00045 37 96 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 42.647 1.89e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC12g00045 K02950 - gmx:3989256 233.802