Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC12g00012 ATGTCACGTTACAGAGGACCTCGTTTCAAAAAAATACGTCGTCTAGGATATTTACCAGGACTTACTAGTAAAAGGCCAACAGTCAAAAACGAATTTCGAAATCAATTGCGCTTCAGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTGCTTAAATACGTTCGTATCTCCGGAAAAGCTAAAGGATCAACTGGTCAGGTTTTATTACAACTACTTGAAATGCGCTTGGATAACATACTTTTTCGATTGGGTATGGCTGCGACTATTCCTCAAGCCCGCCAATTTATAAACCATAGACATGTTTTAGTTAATGGTCGTATAGTGGATATACCAAGTTATCGTTGCAAACCTCAAGATATTATTACAGCAAAGGATGAACAAAAATCAAAAACTCTGATTCAAAATTATCTTGATTCAGCCCCCCATGAGAAATTGCCAAATCATTTGACTGTTCACCCTTTCCAATATAAAGGTTTAATTAATCAAATAATAGATAATAAATGGGTTGGTTTGAAAATAAATGAATTACTGGTTGTAGAATATTATTCTCGTCAAACTTAA 606 0.3366 MSRYRGPRFKKIRRLGYLPGLTSKRPTVKNEFRNQLRFSKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRISGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPQARQFINHRHVLVNGRIVDIPSYRCKPQDIITAKDEQKSKTLIQNYLDSAPHEKLPNHLTVHPFQYKGLINQIIDNKWVGLKINELLVVEYYSRQT 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC12g00012 201 SMART s4_6 89 152 IPR002942 GO:0003723
ViunNC12g00012 201 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 3 199 - -
ViunNC12g00012 201 Gene3D - 88 184 IPR036986 GO:0003723
ViunNC12g00012 201 PANTHER 30S 40S RIBOSOMAL PROTEIN 9 172 IPR022801 GO:0003735|GO:0015935|GO:0019843
ViunNC12g00012 201 SUPERFAMILY Alpha-L RNA-binding motif 3 199 - -
ViunNC12g00012 201 ProSiteProfiles S4 RNA-binding domain profile. 89 151 - -
ViunNC12g00012 201 FunFam 30S ribosomal protein S4, chloroplastic 3 98 - -
ViunNC12g00012 201 ProSitePatterns Ribosomal protein S4 signature. 87 111 IPR018079 GO:0019843
ViunNC12g00012 201 Hamap 30S ribosomal protein S4 [rpsD]. 1 199 IPR005709 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00012 201 CDD S4 89 148 - -
ViunNC12g00012 201 Pfam S4 domain 89 136 IPR002942 GO:0003723
ViunNC12g00012 201 FunFam 30S ribosomal protein S4, chloroplastic 88 184 - -
ViunNC12g00012 201 SMART Ribosomal_S4_2 3 88 IPR001912 GO:0019843
ViunNC12g00012 201 NCBIfam 30S ribosomal protein S4 3 199 IPR005709 GO:0003735|GO:0006412|GO:0015935
ViunNC12g00012 201 Pfam Ribosomal protein S4/S9 N-terminal domain 3 88 IPR001912 GO:0019843
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC12g00012 86 128 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 46.512 6.58e-06 43.1