Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
ViunNC122g00001 ATGGAATTCTCTGTAAGAGCTGCGGAACTAACCACTCTATTAGAAAGTAGAATTACCAACTTTTACACAAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCCGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCGTTGAATCTTGAGAATGAGAATGTCGGAATTGTGGTCTTTGGTAGTGATACCGCTATAAAAGAAGGAGATCTTGTCAAACGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTCGACGCGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGTATTATTGAACGTAAATCTGTGCACGAGCCTATGCAAACAGGGTTAAAAGCGGTAGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGACAAACTGGAAAAACAGCTATTGCTATCGATACCATATTAAATCAAAAGCAAATGAACTCAAGGGCCACCTCAGAGAGTGAGACATTGTATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTAGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCACCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCCGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGTGAGGCTTTCCCAGGCGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGTGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCGGGAGACGTATCGGCCTATATTCCAACCAATGTGATCTCCATTACTGATGGACAAATATGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAGCTATGAAACAAGTCTGCGGTAGTTTAAAACTTGAATTGGCACAATATCGCGAAGTCGCCGCCTTTGCTCAATTTGGCTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTTACAGAAGTACTGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGCTGTCAATGGATTCTTGGATCGAATGCTTTTGGCGATGGCGATCCAGCGGATAAGTTCCATATATTATGAAATATGGACGTGCGTCCTAGTGTTCTTCATCGCCTCGGTATTCATAGGACAAAACTATGCCGCGTGCGATGGGGTGGGAGTGGACGGACCACCGTCCCCGCCTACAGTAGGCACAAATCACCCCAACCCTGCTCCTCTCTTCGAGGCTCCTATGGTTCCTCCCGCGCCTGTGCCCCCCGAAATTCCTACTTTGCCAGAACCTCTGCTATCAGATGAGGTTCGAGGTGACGTACTTTATTCAAGGTATGGTCTCCTCAATTTCGGGGGGGATGCCAATCTCCAGCGTATGACCTCGACTATAACCAACCAGGTGATAGTCGAACGCTACGTCGAGGCAGCATTGGTAGAGGATGGGTTTGACCCACTTTCTATACTTGATAGGTATAGGGACCTTCGGCAACAAATCCATTCTCCGCGGGGGGAACTTCTCTCGGAACGCGCCTATCGTGCCTATGTTGATCAAATCAGAGAGCTGGGCACCAGACAGAGCGTTCCCTATAGGCGCGTAATAGACGCCATTACCAGCTCTCGTCTTCTTTTGGACAGGGCTGGTGGTAGGTGGATTTAA 1989 0.4741 MEFSVRAAELTTLLESRITNFYTNFQVDEIGRVVSVGDGIARVYGLNEIQAGEMVEFASGVKGIALNLENENVGIVVFGSDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKQMNSRATSESETLYCVYVAIGQKRSTVAQLVQILSEANALEYSILVAATASDPAPLQFLAPYSGCAMGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKRSDQTGAGSLTALPVIETQAGDVSAYIPTNVISITDGQICLETELFYRGIRPAINVGLSVSRVGSAAQLKAMKQVCGSLKLELAQYREVAAFAQFGSDLDAATQALLNRGARLTEVLKQPQYAPLPIEKQILVIYAAVNGFLDRMLLAMAIQRISSIYYEIWTCVLVFFIASVFIGQNYAACDGVGVDGPPSPPTVGTNHPNPAPLFEAPMVPPAPVPPEIPTLPEPLLSDEVRGDVLYSRYGLLNFGGDANLQRMTSTITNQVIVERYVEAALVEDGFDPLSILDRYRDLRQQIHSPRGELLSERAYRAYVDQIRELGTRQSVPYRRVIDAITSSRLLLDRAGGRWI 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
ViunNC122g00001 662 NCBIfam F0F1 ATP synthase subunit alpha 5 462 IPR005294 GO:0015986|GO:0045261|GO:0046933
ViunNC122g00001 662 FunFam ATP synthase subunit alpha 3 95 - -
ViunNC122g00001 662 FunFam ATP synthase subunit alpha 383 476 - -
ViunNC122g00001 662 ProSitePatterns ATP synthase alpha and beta subunits signature. 366 375 IPR020003 GO:0005524
ViunNC122g00001 662 Gene3D - 4 95 IPR023366 -
ViunNC122g00001 662 Gene3D - 383 474 IPR038376 -
ViunNC122g00001 662 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 151 375 IPR000194 GO:0005524
ViunNC122g00001 662 Pfam ATP synthase alpha/beta chain, C terminal domain 382 461 IPR000793 GO:0015986
ViunNC122g00001 662 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 4 461 IPR005294 GO:0015986|GO:0045261|GO:0046933
ViunNC122g00001 662 FunFam ATP synthase subunit alpha, mitochondrial 96 382 - -
ViunNC122g00001 662 CDD ATP-synt_F1_alpha_N 29 94 - -
ViunNC122g00001 662 Hamap ATP synthase subunit alpha [atpA]. 3 522 IPR005294 GO:0015986|GO:0045261|GO:0046933
ViunNC122g00001 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 381 IPR027417 -
ViunNC122g00001 662 CDD ATP-synt_F1_alpha_C 386 457 IPR000793 GO:0015986
ViunNC122g00001 662 Gene3D - 96 382 IPR027417 -
ViunNC122g00001 662 CDD F1-ATPase_alpha_CD 96 378 IPR033732 GO:0032559
ViunNC122g00001 662 Pfam ATP synthase alpha/beta family, beta-barrel domain 27 94 IPR004100 GO:0046034|GO:1902600
ViunNC122g00001 662 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 384 462 - -
ViunNC122g00001 662 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 12 96 IPR036121 GO:0046034|GO:1902600
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
ViunNC122g00001 62 381 Primary Pumps ATPases(2) AT4G38510 26.444 1.21e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
ViunNC122g00001 K02132 - gmx:15308624 880.167