Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g04009 ATGGAATATGGAGGGTTCTCAGATATTTTTGCCCCAGAAACGGAGTTTATGGATGAGCTATTTGTAGAAGGATGCTGGGTGGAAGCAAGGGTTGGATGTGGAACGGAGGGTTCAAAGTGGAACAGGAGCATGGAGTCAAATGAGGCGCACATAATATTTGAGGAAGAATCGGAGGCGGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGGGAATCCGGGGCCATCTTCGTCTGTGAAGGAGAGATTAGTGGTTGCGGTTGGGTACTTGAAAGAATACGCCAACAACTCCAATATGGTGATTCAGGTATGGGTCCCCGCCCGGAGAGGATGTGAAGCAGGGATTCATCACCATCAGGATTACCCATACACCCTCGACTATACTAACAGTAACAATGGGGATGCAACAACACCCTTTCCGTTTCAGGAGGAGTGGCTTTCTCATCACTGCCCTCCCAACATTCGCTTCCTCCGAACTCACGACTACTCCCGCCTTCACCACTACGACCTACGTCCTGGATCTCTAGCCCTACCCGTCTTTCAGAGAGGCACTGGGATTTGTCTCGGTGTTATCGACATTCTCATGCCCAACAACGTCAACCAGGACCTTCACGGCCTTCAGGTTCAGAACATGATTCCACCAGCCATGACCGTGAAGGGTTTTGACGACTTATACCAAGGTGCATTGAACGAGATAGTACAAGTGTTGAGATGTGTGTGCAAGGCGCATGAGTTGCCTTTGGCTCTGACATGGGCTCCCTGCATCCAACAAGGAAAGACTGGATGCGGGCATTCAAACGATGAGAATTATGTGTCGACGGTGGATCCAGCAAGCTTTGTGGGAGATGTAGATGTATTGGGATTTGTGGAAGCCTGCTCTGACTACCACCTTTTGGGTGGTCAAGGAGTGGTTGGAACAGCCTTCACAACCGCCAAGCCTTGCTTTGCAAATGACATCACTGCCTTCACCAAGGCTGAATATCCTCTCGCACACCATGCAAACATGTTCGGCTTGCATGCTGCTCTCGCCATTCCTCTCCGGAGTGTCTCCGCTGATTTTGTCCTCGAGTTTTTCCTCCCCAAGGATTGTCATGACACCCAACACCAGAAGCAGATGCTCCACTCCTTGTCTATGCTCCTGCAGCAAGCTTGCCGGACTTTGCACGTTGTACTGGACAAGGAGGAGGAATTGGTTTCACATCATCACCATCATGATACCAACGAAATGGAATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTTTCCGTCTCTCTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAGGTCACAACCAACTGCAATGAACAGGTATTCTCGGACTTGGAAGGAACAGCCGGTGCTGCTGTCGTTGGCCGCCGTGGTGGCAGGAAATCAGGCGACAAGAGGCGAACCAAGGCGGAGAAGACTATCAGCTTGCCGGTTCTAAGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGGGTATGTCCTACCACTTTAAAAAGAATATGCAGACAGCATGGGATTACAAGGTGGCCTTCAAGGAAAATCAAGAAGGTGGGGCACTCCTTAAGGAAACTTCAACTTGTAATCGACTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTACACCAGTTTTCCAGAGTTGAGCTCTGCCAATGGTGTTTCGGAATCACCCACGATCAACAGTGATAATTCCAAGTTTTATTCCGAAAATGGGTTGTTTAACCAAGGAGTCACTTCCACTTCTCCTTTCAAATCCCCAACTTCATCTTGCAGTCAGACTTGTAACCCCAGTTTGAAGCAATCAACCACTCTGATCAACAGCAACAATAATAACAATCCTGACATTATTCTGATGTCAGATAAGCAATCACTAGTTGGCGCATCAGTGCAAGTCCACCATCCTCCAATTCCCATTCCCATTTCCATTCCCATTCAAAGCCTGGATGCTCTACCTCCCCTGCCCCAAACCAGCAGTGTCAGGAACATGGGCGGTGGTACTTTCAGGGTGAAAGCTACTTTTGGAGATGAAAAAATCCGTTTTAGCTTGCAACCAAATTGGGGATTCAGAGATTTGCAGATGGAGATTGCAAGACGTTTCAATCTGAAGGAGACGAGCAAAATTCAGGTGAAGTATTTGGACGATGCTCAAGAGTGGGTTCTTTTGACATGCGATGCAGATCTTGAGGAGTGTAAAGACATAAATAGATCATCTCAGAGCCGCACAGTTAGACTCTTCCTCTTTCATGCTTCCCCACTAAATCATTCAACTAATGCATTTGGCAGCACCAGCCCCACTTAA 2361 0.4833 MEYGGFSDIFAPETEFMDELFVEGCWVEARVGCGTEGSKWNRSMESNEAHIIFEEESEAESLMVGKRWWIGPRGNPGPSSSVKERLVVAVGYLKEYANNSNMVIQVWVPARRGCEAGIHHHQDYPYTLDYTNSNNGDATTPFPFQEEWLSHHCPPNIRFLRTHDYSRLHHYDLRPGSLALPVFQRGTGICLGVIDILMPNNVNQDLHGLQVQNMIPPAMTVKGFDDLYQGALNEIVQVLRCVCKAHELPLALTWAPCIQQGKTGCGHSNDENYVSTVDPASFVGDVDVLGFVEACSDYHLLGGQGVVGTAFTTAKPCFANDITAFTKAEYPLAHHANMFGLHAALAIPLRSVSADFVLEFFLPKDCHDTQHQKQMLHSLSMLLQQACRTLHVVLDKEEELVSHHHHHDTNEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNEQVFSDLEGTAGAAVVGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESPTINSDNSKFYSENGLFNQGVTSTSPFKSPTSSCSQTCNPSLKQSTTLINSNNNNNPDIILMSDKQSLVGASVQVHHPPIPIPISIPIQSLDALPPLPQTSSVRNMGGGTFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLKETSKIQVKYLDDAQEWVLLTCDADLEECKDINRSSQSRTVRLFLFHASPLNHSTNAFGSTSPT 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g04009 786 Pfam RWP-RK domain 488 535 IPR003035 -
Viun9g04009 786 CDD PB1_NLP 688 769 IPR034891 -
Viun9g04009 786 Gene3D - 688 770 - -
Viun9g04009 786 Pfam PB1 domain 687 769 IPR000270 GO:0005515
Viun9g04009 786 SUPERFAMILY CAD & PB1 domains 678 772 - -
Viun9g04009 786 ProSiteProfiles PB1 domain profile. 687 770 IPR000270 GO:0005515
Viun9g04009 786 ProSiteProfiles RWP-RK domain profile. 474 555 IPR003035 -
Viun9g04009 786 PANTHER PROTEIN NLP8 58 774 IPR045012 GO:0003700
Viun9g04009 786 SMART PB1_new 687 770 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g04009 Viun-Chr9 43817757 43820698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g04009 44 782 NLP Transcription Factor Family AT4G35270 41.176 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Viun9g04009 PB1 9.2e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g04009 - - pvu:PHAVU_009G115800g 1283.86