Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g04008 ATGGACGCCTCAAAGGAAAACCGCCTGCCCTCTTCAGATCTTCAAGGGTATCCAAGAATGGAGGAGAATCTGAAGCCCCTCCATCACCGGTTGCCTCTCCGTAGCATCAATCAGAATCTTATGCCTAACAGAAGCCCTGTTCATTCCCGCAAGAGCAAAGGACACGCAGTTCTGCATCACCAACCCCCTCATCCTCATGCAACTAAGAAACACAACATGTTGGCTCCCAACCCGAGTTACAACTTAGACTGTGAAATCATAGCTATCGACGATGATGAGGATGCCGGTGACAACGCAGTTCCAGATTTCGTCAAGCATACTGAAGCCATGCTCGACGAAATAGACAGGATAGAGGAAGTTGAAATGGAAGATGTGCAGGAACCTGTTTTAGACATCGATGCCTGCGACAGGACAGATCCACTTGCAGTTGTTGAGTACATCGATGATATCTACAGCCTCTACAAGAAAATCGAGGATTCGAGCTGTGTCTCTCCAAATTACATGACTAATCAATTTGACATTAATGAGAGGATGAGAGCCATTCTTGTTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACTGTCAATCTCATCGACAGGTTCCTGGAGCGTCAGGCAATGATCAGAAAGAAACTTCAGTTAGTTGGCGTAACAGCTATGCTAATAGCTTGTAAGTACGAGGAGGTCTCAGTCCCTACCGTTGAGGATTTTATTCTGATAACAGACAAGGCATATACAAGGGATGAAGTTTTAGCTATGGAGAAATTGATGATGAACAGTCTGCAATTCAACTTGTCTGTGCCTACTCCATACATGTTCATGAGAAGATTTCTAAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTCGTCCTTCTTCTTGGTTGAACTTTGCTTGGTGGAATACAAAATGCTGAAGTTTTCACCATCTTTGCTAGCTGCTGCAGCCATTTACACAGCTCAATGTAGCATGTACCAGTTTAAGCAATGGACTAAGACCAGCGAGTGGTATACTGATTACTCAGAAGAGCAGCTTCTAGAATGCTCGAGGCTGATGGTTACTTTCCATCGAAAAGCCGGATCAGGAAAACTCACTGGTGTATATAGAAAGTACAGTACATGGAGGTATGGCTGCGCCGCAAAAATAGAGCCTGCTCTGTTTTTACTGGATAATTAA 1203 0.4414 MDASKENRLPSSDLQGYPRMEENLKPLHHRLPLRSINQNLMPNRSPVHSRKSKGHAVLHHQPPHPHATKKHNMLAPNPSYNLDCEIIAIDDDEDAGDNAVPDFVKHTEAMLDEIDRIEEVEMEDVQEPVLDIDACDRTDPLAVVEYIDDIYSLYKKIEDSSCVSPNYMTNQFDINERMRAILVDWLIEVHYKFELLEETLFLTVNLIDRFLERQAMIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRDEVLAMEKLMMNSLQFNLSVPTPYMFMRRFLKAAHSDKKLELSSFFLVELCLVEYKMLKFSPSLLAAAAIYTAQCSMYQFKQWTKTSEWYTDYSEEQLLECSRLMVTFHRKAGSGKLTGVYRKYSTWRYGCAAKIEPALFLLDN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g04008 400 CDD CYCLIN_AtCycB-like_rpt1 127 272 - -
Viun9g04008 400 SUPERFAMILY Cyclin-like 139 274 IPR036915 -
Viun9g04008 400 SMART cyclin_7 184 268 IPR013763 -
Viun9g04008 400 SMART cyclin_7 281 363 IPR013763 -
Viun9g04008 400 FunFam G2/mitotic-specific cyclin-1 265 389 - -
Viun9g04008 400 Gene3D - 163 275 - -
Viun9g04008 400 PANTHER CYCLINS 99 382 IPR039361 -
Viun9g04008 400 Gene3D - 149 390 - -
Viun9g04008 400 MobiDBLite consensus disorder prediction 39 70 - -
Viun9g04008 400 SMART Cyclin_C_2 277 394 IPR004367 -
Viun9g04008 400 SUPERFAMILY Cyclin-like 276 393 IPR036915 -
Viun9g04008 400 PIRSF Cyclin_A_B_D_E 6 400 IPR046965 GO:0016538|GO:0044772
Viun9g04008 400 Pfam Cyclin, C-terminal domain 277 393 IPR004367 -
Viun9g04008 400 Pfam Cyclin, N-terminal domain 149 275 IPR006671 -
Viun9g04008 400 ProSitePatterns Cyclins signature. 179 210 IPR006671 -
Viun9g04008 400 MobiDBLite consensus disorder prediction 48 67 - -
Viun9g04008 400 CDD CYCLIN_AtCycB-like_rpt2 277 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g04008 Viun-Chr9 43798054 43800999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g04008 34 398 Core Cell Cycle Gene Families AT1G20610 59.840 6.23e-157 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g04008 K21777 - gmx:100812029 603.208