Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03998 ATGACGGAAAATACTACACCTAAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGCAAGGACTCAAACTTCAAACTAGAGCCAACTAATATGCTGGCAAGTGCAAATTACCCTCCAGTAGTAAGCTCTGCTGCACATTTATCGTCAGCTGAGGAACAACCTGCTAGTGTTCGGGTAAATCATGAAATGGTGGATAAAAATCCTACCACACCTTCAGTCTTGTGCGATGGAGTAACCAAAGATAACATTCATAAAAACTTAGGTATTAGCAACATAAATGGTAGTTGCTCCCCTTCAAAGGCAGGTATGGAAACTGAAATGAACGGAAATGGTGAATGCTCCATCTCCAGTGTAATAGTCATGGATTCCATTAGAGAAGAGGTGACAACAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTAGAGAATATCCTCCTGAAGATAATGGGGCTTCTGGGAAAGATGTTGTCATCACTGGTAATAATTGTTGTTCCAGGTCATGCAAAATATGTGATCGTTTAGACAGTTCACTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTCGAAGAAATTGCCAATAGATGAGTGGTTTTGTCATTCATGTCTTAAGAAAAGGCAGAAAAATATCAAGGAACCAAGTATCCACAATGAATTGGGAAAATGTAGAGCTACCTCAATCAAGGGTGAATCAAATCCCATATTTTTGATGTTGAGAGACACCAAGCCATATACATCTAGTGTGCGGGTTGGTAAAGGATTTCAGGCAGAAGTTCTTGACTGGTCAGGTCTGATAAAAAGTGATGAAGATACCCTTCCTGAACCATTCGAAATTAATCCTTCAGACTTCAATAGACTGCTGGAAGAGAATACGCGAAGTCCTGCTAAACTTAGTGCCATTGGTAATTGGATCCAATGTCAGACAGTTATAGACAGAACCAATGGAACAATATGTGGAAAATGGCGCAGGGCACCTTTTTTTGAAGTTCAAACTAATGCCTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTACCCCAGGAGCTTGAAACAGATCAAGTATTGAAGCAACTGAAGTATGTGGAAGTGCTACGGCCACGAATTTCTGCTAAAAGGAAAAAATCAGATTGCACACAAGATATGGATTGA 1206 0.4013 MTENTTPKPKMVYRRKKLRKDSNFKLEPTNMLASANYPPVVSSAAHLSSAEEQPASVRVNHEMVDKNPTTPSVLCDGVTKDNIHKNLGISNINGSCSPSKAGMETEMNGNGECSISSVIVMDSIREEVTTKDFCINTLRTHGLLREYPPEDNGASGKDVVITGNNCCSRSCKICDRLDSSLNMLLCDHCEDAYHPSCYNPRSKKLPIDEWFCHSCLKKRQKNIKEPSIHNELGKCRATSIKGESNPIFLMLRDTKPYTSSVRVGKGFQAEVLDWSGLIKSDEDTLPEPFEINPSDFNRLLEENTRSPAKLSAIGNWIQCQTVIDRTNGTICGKWRRAPFFEVQTNAWECFCAIHWDPSHADCAVPQELETDQVLKQLKYVEVLRPRISAKRKKSDCTQDMD 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03998 401 Gene3D - 314 379 - -
Viun9g03998 401 ProSiteProfiles Zinc finger PHD-type profile. 168 218 IPR019787 -
Viun9g03998 401 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 163 228 IPR047171 GO:0006338
Viun9g03998 401 ProSiteProfiles Zinc finger CW-type profile. 310 370 IPR011124 GO:0008270
Viun9g03998 401 FunFam uncharacterized protein LOC106759733 isoform X4 314 379 - -
Viun9g03998 401 SMART PHD_3 170 216 IPR001965 -
Viun9g03998 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 229 IPR013083 -
Viun9g03998 401 ProSitePatterns Zinc finger PHD-type signature. 171 215 IPR019786 -
Viun9g03998 401 Pfam PHD-finger 171 217 IPR019787 -
Viun9g03998 401 SUPERFAMILY FYVE/PHD zinc finger 161 220 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03998 Viun-Chr9 43749834 43762776 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g03998 PHD 7.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03998 - - pvu:PHAVU_009G117100g 736.873