Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03997 ATGTTAATACAAACTTCTCTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTCGAATGCAATAGGTACCCTCTTGACTGGTGTACAAAAGCTGAACTAGTGGAGGCAGATAGAAGGAAAGCTGATGATCCTTACCGCTCAAGCTTGGGTCAGACATCAACTGCTAGTATAATGACGGAAAATACTACACCTAAACCTAAGATGGTATACAGGAGAAAGAAGCTTCGCAAGGACTCAAACTTCAAACTAGAGCCAACTAATATGCTGGCAAGTGCAAATTACCCTCCAGTAGTAAGCTCTGCTGCACATTTATCGTCAGCTGAGGAACAACCTGCTAGTGTTCGGGTAAATCATGAAATGGTGGATAAAAATCCTACCACACCTTCAGTCTTGTGCGATGGAGTAACCAAAGATAACATTCATAAAAACTTAGGTATTAGCAACATAAATGGTAGTTGCTCCCCTTCAAAGGCAGGTATGGAAACTGAAATGAACGGAAATGGTGAATGCTCCATCTCCAGTGTAATAGTCATGGATTCCATTAGAGAAGAGGTGACAACAAAGGATTTCTGCATTAATACTTTAAGAACCCATGGACTTCTTAGAGAATATCCTCCTGAAGATAATGGGGCTTCTGGGAAAGATGTTGTCATCACTGGTAATAATTGTTGTTCCAGGTCATGCAAAATATGTGATCGTTTAGACAGTTCACTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCCATCTTGCTACAATCCACGTTCGAAGAAATTGCCAATAGATGAGTGGTTTTGTCATTCATGTCTTAAGAAAAGGCAGAAAAATATCAAGGAACCAAGTATCCACAATGAATTGGGAAAATGTAGAGCTACCTCAATCAAGGGTGAATCAAATCCCATATTTTTGATGTTGAGAGACACCAAGCCATATACATCTAGTGTGCGGGTTGGTAAAGGATTTCAGGCAGAAGTTCTTGACTGGTCAGGTCTGATAAAAAGTGATGAAGATACCCTTCCTGAACCATTCGAAATTAATCCTTCAGACTTCAATAGACTGCTGGAAGAGAATACGCGAAGTCCTGCTAAACTTAGTGCCATTGGTAATTGGATCCAATGTCAGACAGTTATAGACAGAACCAATGGAACAATATGTGGAAAATGGCGCAGGGCACCTTTTTTTGAAGTTCAAACTAATGCCTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTACCCCAGGAGCTTGAAACAGATCAAGTATTGAAGCAACTGAAGTATGTGGAAGTGCTACGGCCACGAATTTCTGCTAAAAGGAAAAAATCAGATTGCACACAAGATATGGATTGA 1443 0.4068 MLIQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLECNRYPLDWCTKAELVEADRRKADDPYRSSLGQTSTASIMTENTTPKPKMVYRRKKLRKDSNFKLEPTNMLASANYPPVVSSAAHLSSAEEQPASVRVNHEMVDKNPTTPSVLCDGVTKDNIHKNLGISNINGSCSPSKAGMETEMNGNGECSISSVIVMDSIREEVTTKDFCINTLRTHGLLREYPPEDNGASGKDVVITGNNCCSRSCKICDRLDSSLNMLLCDHCEDAYHPSCYNPRSKKLPIDEWFCHSCLKKRQKNIKEPSIHNELGKCRATSIKGESNPIFLMLRDTKPYTSSVRVGKGFQAEVLDWSGLIKSDEDTLPEPFEINPSDFNRLLEENTRSPAKLSAIGNWIQCQTVIDRTNGTICGKWRRAPFFEVQTNAWECFCAIHWDPSHADCAVPQELETDQVLKQLKYVEVLRPRISAKRKKSDCTQDMD 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03997 480 ProSiteProfiles Zinc finger CW-type profile. 389 449 IPR011124 GO:0008270
Viun9g03997 480 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 242 307 IPR047171 GO:0006338
Viun9g03997 480 SUPERFAMILY FYVE/PHD zinc finger 240 299 IPR011011 -
Viun9g03997 480 SMART PHD_3 249 295 IPR001965 -
Viun9g03997 480 Pfam PHD-finger 250 296 IPR019787 -
Viun9g03997 480 MobiDBLite consensus disorder prediction 65 84 - -
Viun9g03997 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 308 IPR013083 -
Viun9g03997 480 ProSitePatterns Zinc finger PHD-type signature. 250 294 IPR019786 -
Viun9g03997 480 MobiDBLite consensus disorder prediction 68 84 - -
Viun9g03997 480 FunFam uncharacterized protein LOC106759733 isoform X4 393 458 - -
Viun9g03997 480 Gene3D - 393 458 - -
Viun9g03997 480 ProSiteProfiles Zinc finger PHD-type profile. 247 297 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03997 Viun-Chr9 43749833 43762776 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g03997 PHD 9.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03997 - - gmx:100813057 777.704