Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03984 ATGCTCTCCATGGACATTGATCTTGAGGTACCTATATGTGAGCATGAGAAGATTAATATTGAATCTAGTGGAAATGATGTTACAGATACAACATGTGATATATGTATTGAGGAGCATAACATCAATCCTTGGTCAATGACTGCACACTGTAAGGAAGTTTTAAGTGAAAAAGCTTTCTGCTGTCAGGATCCAGTGGATTTGAATTCTAATCAAGTGGATGCTATTGATAAATTTCCCATCAAAGAACCTCAAAATGGCTTAGAATTTGAATCAAAGGAGGCTGCCTATTCTTTCTACAGAGAATATGCTCGCTTAGTGGGTTTTGGCATCACGATAAAAGCCAGTCGACGCTCAAAAAAGTCTGGTAAATTTATTGATATTAAAATTGTTTGTTCTAGATTTGGAAGTAAGCGTGAGTCCGGTACAGCTGTTAATCCACGACCATGTACAAAGACGGACTGTAAGGCTGGAATGCATATGAAGAAGAAGCTAGATGGTAACTGGATTGTATACAATTTTGTAAAAGAGCACAATCATGAGATCTGTCCTGATGATTTTGTCAGGGGACGTAGCAAACAAATAAGTAATCTAGCTTGTCGTAAGAAGGCCATGCAATTGGCTCTAGACGAGGGAGATGTGCAGTTGATCATCGAATTCTTAATCTCTATGCAGTGTGAAAATCCGAACTTCTTTTATGCAATAGACCTGGATCAAGATAGACATTTGAGAACTGTATTTTGGGTTGACTCAAAAGGAAAATTTAATTATACAAACTTTCATGATATTGTGTTGATTGACACTTTTTACCTGAAAAACAAATATAAAATTCCTTTTGTTCCTTTTGTCGGGGTCAACCATCACTTCCAGTACATTTTACTTGGATGTGCACTGGTTGGGGAAGAGTCTGTTTCAGCTTTTATGTGGTTAATGCGAGCATGGCTCAAGGCAATGAGTAACCTACCTCCCAAGGTGATCATCACAGACCAGGAGCAATTCTTGAAAGAAGCTGTCATGGAAGTGTTTCCAGATAAACGTCATTGTTTCTGCCTATCACATGTTTTATGTAAAATACCCAAGAATTTGGATTATATCATAAATCAAAATAATAATTTTATGGAAAAATTTGACAAATGCATTCATCATTCCTGTTCAGATGAGAAATTTGAAGAGAGATGGTGGAAGTTGATGAATAGAATTGAACTAAAGGACGACGAATTGGTTCGGTCATTGTATGAAGATCGTAAAAAGTGGGTGCCTACATTCATGCGGGACATTTCTTTGGTTGGATTATCTACAATTGTAAGGTCTGAGAGTATATCATCTTTCTTTGACAAGTATATCCGTGTTGATTCTACCTTAAAGGAATTTATTGAACAGTATAAAGTTTTCTCTGTAGACTGTTTTGACATTGAAGCCAAAGCTGACCTTGAAACAGAGCAAAAGCAACCTACATTAAGATCTTTATCACCTTTTGAGAAGCAGCTATCTACAATTTATACTGATGCCATATTTAGAAAATTTCAGTTGGAAATATTGGGAATGATGTCTTGTCATCCCCAGATGGAAACAGAAGGAAGGGAAAATCTGACGTTTGTTGTTCATGATTTTGAGAAGCGGAAGAAATTTATTGTTTCTTGGAATGAAGCAGATTTGTGTGTCTGTTGTTCATGTTGTTTATTTCAATACAAAGGTTTTCTATGTAGACATGCAATGCTTGTCCTTCAGAAGTCCGGCATAACCAGCATTCCATCCAATTATATTTTAAAACGATGGACAAAAGATGCAAGGGCCGATCAATTTTCTGGTGACATAATTACCAGGACTGCTAATCGAGTTCAACGTTTTAATGACCTTTGTAGGCGGGCAATTGTATTAAGTGAAATTGGATCTTTATCTGAAGATACTTACCGTGTTGCATCTCAGGCCATGGAAGAAGTGTATAAACACTGTATGAACACAAAATATTCTGCCAGAAACACTTCGGATCCCAACAAGTTGGCTCCTAATGCTTTTGATGTTGAAGATAAAAATTATGGCTGCGACAGGGCAAAACATACTAAGAAAAGGAAGTCATTCAGTAAAAGGGAATGCTCTGATCCAGAAAGAATCAATATCAAGACGATGGATGATCTCAGAAAGAGGGAACAGAGAAGTACAAGAGCGCACGACTTCAGTAATTGTTACATTTATCAGCACGACATGCAAACTGTGGACTTGGATTCTAGAGCTTTGACCCTTGATGCCTATTATGGGACTCAGCAGAGTGTGCTTGAAGATCTGAACTCAGTCTCTGTCATGCATGATGGCTATTATAGCAGTCAACCGGCCGTTCTGGGACTGGGGCAATTGGATTCCATGGCAAGCCGTGGTCCACATTATGGGATGCAGCACAGGATGCAAGGACCGGTACTTCAAGGAGAACTCACTTTCAGAACGCCAACAGTACAAGGGTGTTTTGACCTCCAAGATAGTCTAGAACCTATAGAAGAACCTATTAAGGCCTCACAGTTCCATGACATTGCATCAAAGCAACTAGAAGATGATAAATCGCTTTCCTGA 2559 0.3837 MLSMDIDLEVPICEHEKINIESSGNDVTDTTCDICIEEHNINPWSMTAHCKEVLSEKAFCCQDPVDLNSNQVDAIDKFPIKEPQNGLEFESKEAAYSFYREYARLVGFGITIKASRRSKKSGKFIDIKIVCSRFGSKRESGTAVNPRPCTKTDCKAGMHMKKKLDGNWIVYNFVKEHNHEICPDDFVRGRSKQISNLACRKKAMQLALDEGDVQLIIEFLISMQCENPNFFYAIDLDQDRHLRTVFWVDSKGKFNYTNFHDIVLIDTFYLKNKYKIPFVPFVGVNHHFQYILLGCALVGEESVSAFMWLMRAWLKAMSNLPPKVIITDQEQFLKEAVMEVFPDKRHCFCLSHVLCKIPKNLDYIINQNNNFMEKFDKCIHHSCSDEKFEERWWKLMNRIELKDDELVRSLYEDRKKWVPTFMRDISLVGLSTIVRSESISSFFDKYIRVDSTLKEFIEQYKVFSVDCFDIEAKADLETEQKQPTLRSLSPFEKQLSTIYTDAIFRKFQLEILGMMSCHPQMETEGRENLTFVVHDFEKRKKFIVSWNEADLCVCCSCCLFQYKGFLCRHAMLVLQKSGITSIPSNYILKRWTKDARADQFSGDIITRTANRVQRFNDLCRRAIVLSEIGSLSEDTYRVASQAMEEVYKHCMNTKYSARNTSDPNKLAPNAFDVEDKNYGCDRAKHTKKRKSFSKRECSDPERINIKTMDDLRKREQRSTRAHDFSNCYIYQHDMQTVDLDSRALTLDAYYGTQQSVLEDLNSVSVMHDGYYSSQPAVLGLGQLDSMASRGPHYGMQHRMQGPVLQGELTFRTPTVQGCFDLQDSLEPIEEPIKASQFHDIASKQLEDDKSLS 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03984 852 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 71 650 IPR031052 GO:0006355
Viun9g03984 852 Pfam MULE transposase domain 262 354 IPR018289 -
Viun9g03984 852 Pfam SWIM zinc finger 551 576 IPR007527 GO:0008270
Viun9g03984 852 ProSiteProfiles Zinc finger SWIM-type profile. 540 578 IPR007527 GO:0008270
Viun9g03984 852 Pfam FAR1 DNA-binding domain 97 182 IPR004330 -
Viun9g03984 852 SMART 26again6 553 580 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03984 Viun-Chr9 43697243 43701679 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun9g03984 MULE 2.5e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03984 - - gmx:100802811 1313.13