Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03979 ATGGTGGTTGGGAGAGTTGTTGTTCTAAATCCTCCCTCCAATCTGTTCCACAATCCTTCTTCTGCTGCATCGCTCATACCTCCACACACTCGTCTTCTCTCTTTCTCCGCTTCCGCCGCCGCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTCCGCCAATCGCACTCGTCACACACCCACTACCAAAAACGATTCTCCCTTCTCAACCTTCGGAAGAGTCAAGACTCAGAAACCGAAAACTCTGCTCCACAGAAGCAGGGACCGAAGACGTACCCTTCAAGTTGAAGAAGAAGAAGAAGATGATGACGATAACTATGGTAATTATGATGATAATGACGACTACTCAGCCCCAAGACGAGGAAGACCCTCTCAGTCTGGGTCTCGGTCAGGTGGACGAAAACGAGGAGGATGGGATATCATTCCCAGGTTTCCCTCACAAGCCGAGTCAACCACTGACACAAACTTCTTCAGTCTCAAGTCATTTAAAGAAATTGGGTGCGCTGACTACATCATTCAATCCCTCCAAAAAATCTTCTTAACGCGCCCTTCCCATGTACAGGCCATGGCTTTTGCTCCTGTTCTTAGCGGAAAGACTTGTGTCATAGCCGACCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAAGAACAAGAAGGACGTAGTCAATCCTCTTCGCAAGCTCCTAGAGTGCTGGTACTCGCACCCACTGCGGAGTTAGCTTCTCAGGTCTTGGATAATTGTCGATCCCTGTCAAAATCTGGGATTCCATTCAAATCTATGGTTGTCACGGGAGGTTTTCGACAAAGGACTCAACTGGAAAATTTACAGCAGGGAGTTGATGTCTTAATAGCAACGCCTGGCCGTTTTTTGTACCTCATGAATGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATTCTCTTTGGAGATGAGGACTTTGAACGGGCTCTTCAATGCCTGATCAATTCTTCACCGGTCGACACACAGTACCTATTTGTGACTGCAACTTTACCAAAAAATGTTTTCACCAAATTGGTTGAAGTTTTTCCTGACTGCCAAATGATTATGGGGCCTGGTATGCATCGAATAAGTTCTCGTCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTCAACAAGAAAACCGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTTCCAAGAACAATTGTGTTCTGCAACAAGATTGAAACATGCAGAAAAGTTGAAAATTCATTAAGGCGTTTTGATAGAAAAGGAAATAACATGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGCATGGAAGAGTTTACTCGTCCTCCTTCAAAAGGAGTTTCCCAGTTTATGGTTTGCACCGACAGGGCTTCGCGAGGAATAGACTTTGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCGAGGGGAGTAGGAAAGGCATTTATTTTTGTGGTTGGCAAGCAAGTATCCCTTGCAAGCAAAATAATGGAAAGAAGTCGGAAGGGTCACCCACTACATGATGTGCCTACACCATATTAG 1689 0.4577 MVVGRVVVLNPPSNLFHNPSSAASLIPPHTRLLSFSASAAAAAAASSSSSSANRTRHTPTTKNDSPFSTFGRVKTQKPKTLLHRSRDRRRTLQVEEEEEDDDDNYGNYDDNDDYSAPRRGRPSQSGSRSGGRKRGGWDIIPRFPSQAESTTDTNFFSLKSFKEIGCADYIIQSLQKIFLTRPSHVQAMAFAPVLSGKTCVIADQSGSGKTLAYLAPIIQRLRQEEQEGRSQSSSQAPRVLVLAPTAELASQVLDNCRSLSKSGIPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLYLMNEGFLQLTNLRCAVLDEVDILFGDEDFERALQCLINSSPVDTQYLFVTATLPKNVFTKLVEVFPDCQMIMGPGMHRISSRLEEILVDCSGEDGQEKTPDTAFFNKKTALLQLVEESPVPRTIVFCNKIETCRKVENSLRRFDRKGNNMQVLPFHAAMTQESRLASMEEFTRPPSKGVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGARGVGKAFIFVVGKQVSLASKIMERSRKGHPLHDVPTPY 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03979 562 MobiDBLite consensus disorder prediction 46 144 - -
Viun9g03979 562 Gene3D - 142 371 IPR027417 -
Viun9g03979 562 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 66 559 - -
Viun9g03979 562 MobiDBLite consensus disorder prediction 46 75 - -
Viun9g03979 562 CDD SF2_C_DEAD 383 534 - -
Viun9g03979 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 562 IPR001650 -
Viun9g03979 562 CDD DEADc 170 357 - -
Viun9g03979 562 Gene3D - 402 556 IPR027417 -
Viun9g03979 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 371 IPR014001 -
Viun9g03979 562 Pfam DEAD/DEAH box helicase 184 357 IPR011545 GO:0003676|GO:0005524
Viun9g03979 562 SMART helicmild6 434 524 IPR001650 -
Viun9g03979 562 SMART ultradead3 178 386 IPR014001 -
Viun9g03979 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 535 IPR027417 -
Viun9g03979 562 Pfam Helicase conserved C-terminal domain 407 523 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03979 Viun-Chr9 43691981 43696577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03979 158 532 Eukaryotic Initiation Factors Gene Family AT3G19760 26.596 5.02e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03979 K13179 - gmx:100784377 778.089