Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03971 ATGGGTGATGAGAGTGTTGCTGCTTGGCCTCAAGAGGACCCTCTGTGGCTCAGTTTCCTTGAGCAGATATCACAGTGTGTGGAGACACCGCCTCAAATTCAGAATCAAAACCAAGTGGTCGCAACAGAAATGGGATGCGAATGTGAATACGGTAGTGAAGCACACCGAGCAGCCTCGTTGAGTAGGTTTCGTCAAAAGAGGAAACGACGATGTTTTGCTAATAAAATAAGATACAAGACGCGTCAAGAAGCTACCCTCAGGGTACATCGTAGTAAGAGCCAGCTTATTTTGTCTAAAATCCAAGGGTCAGAACAAGATGTCATTTATCCAGAGATATTATGCTGCAATTGTGGCATTAGCTCAAAATGCACCCCTATGATGCGAAGAGGGCCATCTGGACCAGGCTCACTTTGCAATGCTTGTGGGCTTTCTTGGGCAAACAGGGGTGTCTTCAACTATAAGAAAGCAATTTAA 474 0.4536 MGDESVAAWPQEDPLWLSFLEQISQCVETPPQIQNQNQVVATEMGCECEYGSEAHRAASLSRFRQKRKRRCFANKIRYKTRQEATLRVHRSKSQLILSKIQGSEQDVIYPEILCCNCGISSKCTPMMRRGPSGPGSLCNACGLSWANRGVFNYKKAI 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03971 157 CDD ZnF_GATA 114 150 IPR000679 GO:0006355|GO:0043565
Viun9g03971 157 ProSitePatterns GATA-type zinc finger domain. 114 141 IPR000679 GO:0006355|GO:0043565
Viun9g03971 157 Pfam CCT motif 56 93 IPR010402 GO:0005515
Viun9g03971 157 ProSiteProfiles CCT domain profile. 56 98 IPR010402 GO:0005515
Viun9g03971 157 Pfam GATA zinc finger 114 150 IPR000679 GO:0006355|GO:0043565
Viun9g03971 157 Gene3D - 112 156 IPR013088 GO:0006355|GO:0008270
Viun9g03971 157 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 111 151 - -
Viun9g03971 157 PANTHER GATA TRANSCRIPTION FACTOR 28 35 151 IPR045280 GO:0006355
Viun9g03971 157 SMART GATA_3 109 155 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03971 Viun-Chr9 43673888 43675512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03971 31 151 Tify Gene Family AT4G24470 52.593 2.48e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun9g03971 GATA 2.6e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03971 - - vun:114195957 330.102