Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03967 ATGGCTGATCCACAACCGTTGCTGCTCAACGATTCGGAGCCAACTCAATTCCAGAACGCCAGACCCACCCGAATCGCTTCCCTCGACGTCTTTCGCGGCCTCTCTGTTTTTCTTATGATAGTGGTGGATTACGGGGGTTCCATCTTCCCCATCATTGCTCATGCCCCCTGGAATGGAATTCACTTGGCTGATCTCGTCATGCCATTTTTTCTCTTCATTGCTGGAATTTCTCTTGCACTCGTTTATAAGAGAAGGCCGCAGAGAACACAAGCTACATGCAAAGCTTTCGCCAGAGCAGTCAAACTATTTGTTCTCGGTGTTGTTCTTCAAGGAGGCTATTTTCACGGTATAACTTCCTTGACTTTTGGTGTTGACATTGAAAGAATTCGGTGGTTGGGAATTTTACAGAGGATATCTATTGGATACATTGTTGCAGCTTTAATCGAGATCTGGCTTCCACCTCCGCGATGGAAAGAAATAAATTTCGTCAAAAATTACTACTGGCAATGGTTTGTTGTTGTAATATTGCTGGCGCTTTACTCAGGATTACTGTATGGTCTATATGTTCCAGATTGGCAGTTTGATGTATCAGCCTCGTCCTCTTCGCTGCCTCCTATTGGTGGTGGTGATATTTACACGGTCAATTGTTCAGTGAGAGGCGATCTTGGACCTGCGTGTAATTCTGCTGGAATGATTGATCGCTACATACTTGGTCTAGGCCATCTGTATAGAAAACCAGTTTACAGAAACCTTAGGGAGTGCAATATGTCTAAGGGTCAAGTTTCAGATAGTTCACCTTCATGGTGTCATGCTCCTTTTGACCCCGAAGGCATTTTAAGCTCCATAACAGCAGCAGTTTCATGCATAATTGGACTTCAATATGGTCACGTTCTTGCCCACCTACAGGACCACAAAGAGCGCCTATACAACTGGATGTGTTTTTCCCTTTCACTTTTGGCTCTTGGATTGTTCCTGGCCTTAACAGGAATTCCAATAAATAAAGCTCTGTACACCGTCAGTTATATGCTACTAACTTCTGCAGCTTCTGGTCTCACATTCATTGCTTTATATTACCTGGTAGATGTTCATGGCCACAGGCGTTTGACAGCGGTGTTGGAGTGGATGGGAAAACACTCTTTGAGTATATTTGTCATCGTATCTTCAAACTTGGCCGTGATTGCTATTCAAGGATTTTATTGGAGTAAACCCGAAAACAACATTATAAACTGGATTGTGACACGTTTCGACCGCACCCACACAATGTCCAAGGAACTCACCGAAGAGGGTCAACAAAGGAAGGACTACGTCGACCCTCCACCAGCCCCTCTCATCGACCTCGCCGAGATTAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATCGCCACCCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATCGGTCACAAGAAACAGACCGGTCCTTGCGACGGCGTTGGTCTTCTCGGCATAGCCTGGGCCTTCGGTGGCATGATCTTCGTTCTCGTCTACTGCACCGCTGGCATTTCTGGTGGACACATAAACCCAGCGGTGACCTTTGGCCTATTCCTGGCGCGCAAGGTCTCGCTGATCCGTGCGGTTCTCTACATTGTAGCACAGTGCCTTGGTGCCATCAGCGGCGTCGGCTTGGTGAAGGCCTTCATGAAGCACCCCTACAACTCCCTCGGCGGCGGTGCCAACTCCGTCAGCCCTGGCTACTCCGAAGGCACTGCTCTCGGTGCGGAGATTATCGGTACCTTTGTGCTTGTCTACACCGTTTTCGCTGCCACCGACCCCAAGAGAAGCGCGCGTGACTCTCACATCCCCGTGTTGGCTCCATTGCCTATTGGGTTCGCCGTTTTCATGGTTCACCTGGCTACCATACCCATTACCGGTACCGGGATTAACCCTGCCAGGAGCTTCGGAGCTGCTGTCATCTACAACAATGGCAAAGTTTGGGATGACCATTGGATCTTTTGGGTTGGACCATTCGTGGGAGCGTTGGCGGCGGCGGCATACCACCAGTACATACTGAGAGCAGCGGCTATCAAGGCGTTGGGGTCCTTCCGGAGCAACCCTACGAACTAG 2097 0.4931 MADPQPLLLNDSEPTQFQNARPTRIASLDVFRGLSVFLMIVVDYGGSIFPIIAHAPWNGIHLADLVMPFFLFIAGISLALVYKRRPQRTQATCKAFARAVKLFVLGVVLQGGYFHGITSLTFGVDIERIRWLGILQRISIGYIVAALIEIWLPPPRWKEINFVKNYYWQWFVVVILLALYSGLLYGLYVPDWQFDVSASSSSLPPIGGGDIYTVNCSVRGDLGPACNSAGMIDRYILGLGHLYRKPVYRNLRECNMSKGQVSDSSPSWCHAPFDPEGILSSITAAVSCIIGLQYGHVLAHLQDHKERLYNWMCFSLSLLALGLFLALTGIPINKALYTVSYMLLTSAASGLTFIALYYLVDVHGHRRLTAVLEWMGKHSLSIFVIVSSNLAVIAIQGFYWSKPENNIINWIVTRFDRTHTMSKELTEEGQQRKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIVAQCLGAISGVGLVKAFMKHPYNSLGGGANSVSPGYSEGTALGAEIIGTFVLVYTVFAATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNGKVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03967 698 Pfam Heparan-alpha-glucosaminide N-acetyltransferase, catalytic 24 150 IPR012429 -
Viun9g03967 698 Gene3D Glycerol uptake facilitator protein. 441 698 IPR023271 -
Viun9g03967 698 ProSitePatterns MIP family signature. 516 524 IPR022357 -
Viun9g03967 698 NCBIfam MIP family channel protein 460 676 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 Pfam Major intrinsic protein 449 676 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 PRINTS Major intrinsic protein family signature 660 680 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 PRINTS Major intrinsic protein family signature 535 554 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 PRINTS Major intrinsic protein family signature 456 475 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 PRINTS Major intrinsic protein family signature 498 522 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 PRINTS Major intrinsic protein family signature 584 602 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 PRINTS Major intrinsic protein family signature 620 642 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 SUPERFAMILY Aquaporin-like 448 682 IPR023271 -
Viun9g03967 698 CDD MIP 456 680 IPR000425 GO:0015267|GO:0016020|GO:0055085
Viun9g03967 698 PANTHER LD22376P 17 450 - -
Viun9g03967 698 FunFam Probable aquaporin PIP1-2 441 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03967 Viun-Chr9 43639002 43647125 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03967 421 698 Major Intrinsic Protein MIP AT2G16850 89.928 4.69e-179 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03967 - - vra:106761912 1350.88