LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03959	ATGGCAAGCCACGAAGACGACCTTGATCTCCTTCTCTCCCTTCAGGACAGAGTTCCCGACACTCCTCCCGGTTCTCCGACACCAGGTTACCTTTCCGATGACGAATCACTCAACCAAAGGGACAAACCTGACATGTCCGTATTCAAAAACGCCGTTCAAGATTGCCTTCCCTACGACCCCCCAAAGCTCAAACCAACAAACAAACCTGTTGCTAACGATTCCCAGCTTGAAAAGTTTTCAGGCCTTCGCATTAGGAACCAATTGTTAACTCCTGCGGCACTCAAGGAACATTTTTCGGACATTCGCTTTGTTCGGCTATCTGTTATCAAGAATTCGTTGATTGGAGATACTTTCTCCGGAAATTGGGCCACTGTTGGTGTTTTGACTGAGAAGGGGAGTCAGAAGACGAGTTCAACGGGGAAAAGCTATTGTATATGGAAAATTGGGTGTCTGGATGAACGTACCGTTTCTCTTTTCTTGTTTGGAGATGCTTATCAGAGGAACATGCAAGAGCATGCGGGAACGGTCTTTGCACTGTTTAACTGTGCTGTTCGCAAGGATAATGCGGGCAATGGTTTTTCTTTGAGTATATACTCCACTAGACAAATTATGAAGATGGGCACCTCTGTTGATTATGGAGTTTGCAAAGGGAAGCGAACAGATGGGATGGCTTGTACGCTGGTCATAAATAAACGTCATGGGACATATTGTAAATATCATAAATCAAAAACATCAGAGAAATATTCCACGATGCGAAGTGAACTCATGGGAGGAAACTTAAGGACAGCGTTTAGGCCTAAGTCTAGGGATTACCTCAAATCAGAAGGAATTTACTTAGTTGATCCCCTTGCTGACAAAACAAACTTGAAGAATTCTCGGCCAGTGAAACTATTGTCCTCGGATGGTCTCAGAAAGGCATTGAGCAATGCAGGAAAAGTAACAACAACTCCTCATTCTCAAGGGATCAGGTTTCTTTCTCAGCTTGCAGCCATGTCGGATCTAAAAGTGAAGAATAAAGGATCAAAGATTCCGCATGAACAAAAATGTACGGAGAAGAGGAAATCATCTTCTCCGAATGTGGGATCCTCTTCAGTCATAAGAAACCGACAGTTGGATGGAAAAAGAATAAAACCAGATGGCCAGGTTTTGGCTGCTAAAACTTCAAAGTGTACAGAAAAGATGATTGAATTAGACTTTGTTAGTTCAGAGGAAGACTTCTAA	1221	0.4316	MASHEDDLDLLLSLQDRVPDTPPGSPTPGYLSDDESLNQRDKPDMSVFKNAVQDCLPYDPPKRXKPTNKPVANDSQLEKFSGLRIRNQLLTPAALKEHFSDIRFVRLSVIKNSLIGDTFSGNWATVGVLTEKGSQKTSSTGKSYCIWKIGCLDERTVSLFLFGDAYQRNMQEHAGTVFALFNCAVRKDNAGNGFSLSIYSTRQIMKMGTSVDYGVCKGKRTDGMACTLVINKRHGTYCKYHKSKTSEKYSTMRSELMGGNLRTAFRPKSRDYLKSEGIYLVDPLADKTNLKNSRPVKLLSSDGLRKALSNAGKVTTTPHSQGIRFLSQLAAMSDLKVKNKGSKIPHEQKCTEKRKSSSPNVGSSSVIRNRQLDGKRIKPDGQVLAAKTSKCTEKMIELDFVSSEEDF	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03959	407	PANTHER	PROTEIN MCM10 HOMOLOG	36	340	IPR040184	GO:0003690\|GO:0003697\|GO:0006270
	Viun9g03959	407	MobiDBLite	consensus disorder prediction	351	376	-	-
	Viun9g03959	407	Pfam	Primase zinc finger	208	253	IPR015408	GO:0005634\|GO:0006260
	Viun9g03959	407	FunFam	DNA replication licensing factor mcm10	69	243	-	-
	Viun9g03959	407	MobiDBLite	consensus disorder prediction	355	370	-	-
	Viun9g03959	407	Gene3D	-	68	242	IPR012340	-
	Viun9g03959	407	MobiDBLite	consensus disorder prediction	1	44	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g03959	17	406	Core DNA Replication Machinery Family	AT2G20980	53.535	2.60e-139	401

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03959	K10736		-	gmx:100527758	624.009