Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03952 ATGGGAAGGTCTCCTTGTTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGACGATCGCCTCATAGCTTACATCAGAGCTCACGGCGAAGGTTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTTCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATCAACTACCTCCGCCCTGACCTCAAACGCGGCAATTTCACGGAAGAAGAAGACGAGCTCATCATCAAACTCCATAGTCTCCTCGGGAACAAGTGGTCTCTGATAGCTGGGAGATTGCCGGGGAGAACGGACAATGAGATAAAGAATTACTGGAACACTCACATAAGAAGGAAGCTTTTGAGCAGAGGGATTGACCCTGCAACTCACAGGTCTCTCAACGACTCTCCCCGTCACAATCAAGCCCAGGAATCAGCCGGCGCAGCCACCATATGTTTTGCTCCTAAACAAGAGGAAAAGGACAACAACGTGTTGTTCGTGGAGGTTAAGGATTCCAAAAGTCCCACATCGGAACGCTGCCCTGACTTGAACCTTGAGCTAAGCATCAGTCCCCCCCATCACGAGCGGGAGGAGGGTGGCGATGGCGATGAAGAGGAATCGAAGAGTATTGGGAGAAGCCTTTGCTTTGCCTGCAGTTTGGGTTTGCAAAACAGCAAAGACTGTAGCTGTGCCCTCAATGCCATCACTGCTAATGCCAACGCTTCTTCTGCCACTGGCTTCGATTTCTTGGGCTTGAAAACCAGCCCTTTGGACTACAGAACCCTGCAAATGAAATGA 786 0.5204 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRSLNDSPRHNQAQESAGAATICFAPKQEEKDNNVLFVEVKDSKSPTSERCPDLNLELSISPPHHEREEGGDGDEEESKSIGRSLCFACSLGLQNSKDCSCALNAITANANASSATGFDFLGLKTSPLDYRTLQMK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03952 261 FunFam MYB-related transcription factor 13 66 - -
Viun9g03952 261 CDD SANT 69 112 IPR001005 -
Viun9g03952 261 SMART sant 66 114 IPR001005 -
Viun9g03952 261 SMART sant 13 63 IPR001005 -
Viun9g03952 261 CDD SANT 16 61 IPR001005 -
Viun9g03952 261 MobiDBLite consensus disorder prediction 185 203 - -
Viun9g03952 261 FunFam Myb transcription factor 68 137 - -
Viun9g03952 261 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Viun9g03952 261 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun9g03952 261 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun9g03952 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun9g03952 261 Gene3D - 68 143 - -
Viun9g03952 261 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun9g03952 261 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 172 - -
Viun9g03952 261 MobiDBLite consensus disorder prediction 123 142 - -
Viun9g03952 261 MobiDBLite consensus disorder prediction 170 203 - -
Viun9g03952 261 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Viun9g03952 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun9g03952 261 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03952 Viun-Chr9 43524790 43526193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03952 1 261 MYB Transcription Factor Family AT4G38620 59.170 5.28e-109 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun9g03952 Myb_DNA-binding 3.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03952 K09422 - qsu:112037069 366.696